Information for 7-GCTGTTGCCGCGG (Motif 11)

A C T G A T G C A C G T A T C G A G C T G C A T A C T G A G T C A G T C T A C G A G T C A T C G A C T G
Reverse Opposite:
A G T C A T G C C T A G A T G C A C T G A C T G G T A C C G T A C T G A A T G C G T C A A T C G A G T C
p-value:1e-8
log p-value:-1.996e+01
Information Content per bp:1.807
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif11.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets48.6 +/- 22.4bp
Average Position of motif in Background40.2 +/- 41.1bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1/MA0509.1/Jaspar

Match Rank:1
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:GCTGTTGCCGCGG----
---GTTGCCATGGNAAC
 A C T G A T G C A C G T A T C G A G C T G C A T A C T G A G T C A G T C T A C G A G T C A T C G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GCTGTTGCCGCGG---
--NGTTGCCATGGCAA
 A C T G A T G C A C G T A T C G A G C T G C A T A C T G A G T C A G T C T A C G A G T C A T C G A C T G A C G T A C G T A C G T
A C G T A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GCTGTTGCCGCGG
-CTGTTGCTAGGS
 A C T G A T G C A C G T A T C G A G C T G C A T A C T G A G T C A G T C T A C G A G T C A T C G A C T G
A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCTGTTGCCGCGG----
-CGGTTGCCATGGCAAC
 A C T G A T G C A C G T A T C G A G C T G C A T A C T G A G T C A G T C T A C G A G T C A T C G A C T G A C G T A C G T A C G T A C G T
A C G T A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GCTGTTGCCGCGG---
--GGTTGCCATGGCAA
 A C T G A T G C A C G T A T C G A G C T G C A T A C T G A G T C A G T C T A C G A G T C A T C G A C T G A C G T A C G T A C G T
A C G T A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:6
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GCTGTTGCCGCGG----
--KGTTGCCATGGCAAC
 A C T G A T G C A C G T A T C G A G C T G C A T A C T G A G T C A G T C T A C G A G T C A T C G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

Spz1/MA0111.1/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCTGTTGCCGCGG
GCTGTTACCCT--
 A C T G A T G C A C G T A T C G A G C T G C A T A C T G A G T C A G T C T A C G A G T C A T C G A C T G
A C T G T G A C A G C T A T C G G C A T C G A T G C T A G T A C A G T C T A G C A G C T A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCTGTTGCCGCGG--
NNCGTTGCTATGGNN
 A C T G A T G C A C G T A T C G A G C T G C A T A C T G A G T C A G T C T A C G A G T C A T C G A C T G A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

PB0117.1_Eomes_2/Jaspar

Match Rank:9
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----GCTGTTGCCGCGG
GCGGAGGTGTCGCCTC--
 A C G T A C G T A C G T A C G T A C G T A C T G A T G C A C G T A T C G A G C T G C A T A C T G A G T C A G T C T A C G A G T C A T C G A C T G
T A C G A T C G T C A G C T A G C T G A T A C G A T C G A G C T T C A G C G A T G A T C A C T G T A G C A G T C A G C T T A G C A C G T A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----GCTGTTGCCGCGG------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C T G A T G C A C G T A T C G A G C T G C A T A C T G A G T C A G T C T A C G A G T C A T C G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A