Information for 1-TCATRAAGTAAGG (Motif 4)

C G A T A T G C C G T A A C G T C T G A C G T A C G T A C T A G A G C T C G T A C G T A T C A G A C T G
Reverse Opposite:
G T A C A G T C C G A T A C G T C T G A A G T C A C G T C G A T A G C T G T C A A C G T T A C G C G T A
p-value:1e-13
log p-value:-3.045e+01
Information Content per bp:1.755
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.93%
Number of Background Sequences with motif42.7
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets43.3 +/- 26.9bp
Average Position of motif in Background45.3 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TCATRAAGTAAGG
NGYCATAAAWCH---
 A C G T A C G T C G A T A T G C C G T A A C G T C T G A C G T A C G T A C T A G A G C T C G T A C G T A T C A G A C T G
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TCATRAAGTAAGG
GTCGTAAAAT----
 A C G T C G A T A T G C C G T A A C G T C T G A C G T A C G T A C T A G A G C T C G T A C G T A T C A G A C T G
T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TCATRAAGTAAGG
GTCATAAAAN----
 A C G T C G A T A T G C C G T A A C G T C T G A C G T A C G T A C T A G A G C T C G T A C G T A T C A G A C T G
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TCATRAAGTAAGG
GCAATAAAA-----
 A C G T C G A T A T G C C G T A A C G T C T G A C G T A C G T A C T A G A G C T C G T A C G T A T C A G A C T G
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T A C G T

IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:5
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---TCATRAAGTAAGG
BAGTCATANTGAAAG-
 A C G T A C G T A C G T C G A T A T G C C G T A A C G T C T G A C G T A C G T A C T A G A G C T C G T A C G T A T C A G A C T G
A C T G C G T A A T C G C G A T T G A C C G T A C G A T G C T A G T C A C G A T T C A G C T G A C T G A C T G A T A C G A C G T

PH0038.1_Hlx/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TCATRAAGTAAGG
TGTAATTAATTATGG
 A C G T A C G T C G A T A T G C C G T A A C G T C T G A C G T A C G T A C T A G A G C T C G T A C G T A T C A G A C T G
C A G T C T A G G A C T G C T A C G T A G A C T G A C T C G T A C T G A G C A T C G A T C T G A C A G T C A T G C A T G

PH0068.1_Hoxc13/Jaspar

Match Rank:7
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----TCATRAAGTAAGG
AAAGCTCGTAAAATTT--
 A C G T A C G T A C G T A C G T A C G T C G A T A T G C C G T A A C G T C T G A C G T A C G T A C T A G A G C T C G T A C G T A T C A G A C T G
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---TCATRAAGTAAGG
AAGCCATAAAA-----
 A C G T A C G T A C G T C G A T A T G C C G T A A C G T C T G A C G T A C G T A C T A G A G C T C G T A C G T A T C A G A C T G
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T A C G T A C G T

PH0073.1_Hoxc9/Jaspar

Match Rank:9
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----TCATRAAGTAAGG
GGAGGTCATTAATTAT--
 A C G T A C G T A C G T A C G T A C G T C G A T A T G C C G T A A C G T C T G A C G T A C G T A C T A G A G C T C G T A C G T A T C A G A C T G
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TCATRAAGTAAGG
GGTAATAAAAA----
 A C G T A C G T C G A T A T G C C G T A A C G T C T G A C G T A C G T A C T A G A G C T C G T A C G T A T C A G A C T G
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T