Information for 5-CCATGATRTC (Motif 35)

A G T C A G T C G T C A A G C T A C T G C G T A A C G T T C G A A G C T T A G C
Reverse Opposite:
A T C G C T G A A G C T C G T A C G A T G T A C C T G A C A G T A C T G A C T G
p-value:1e-6
log p-value:-1.499e+01
Information Content per bp:1.732
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.53%
Number of Background Sequences with motif269.5
Percentage of Background Sequences with motif0.55%
Average Position of motif in Targets46.2 +/- 28.4bp
Average Position of motif in Background51.0 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0128.1_Gcm1_2/Jaspar

Match Rank:1
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----CCATGATRTC--
NTCNTCCCCTATNNGNN
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C G T C A A G C T A C T G C G T A A C G T T C G A A G C T T A G C A C G T A C G T
T G A C C A G T A G T C T A G C A G C T A G T C T A G C G T A C G T A C A G C T C T G A A G C T C A T G A T G C T A C G G T A C G C T A

PH0037.1_Hdx/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCATGATRTC-----
TNNNATGATTTCNNCNN
 A C G T A C G T A G T C A G T C G T C A A G C T A C T G C G T A A C G T T C G A A G C T T A G C A C G T A C G T A C G T A C G T A C G T
A C G T C A T G T A G C C T A G C T G A C G A T A T C G G T C A G C A T G C A T A C G T G A T C C A T G G T A C T G A C G A C T G C A T

SPDEF/MA0686.1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCATGATRTC
ACCCGGATGTA
 A C G T A G T C A G T C G T C A A G C T A C T G C G T A A C G T T C G A A G C T T A G C
C G T A T G A C T A G C G T A C T A C G C A T G C T G A G C A T T C A G G A C T C T G A

YY1/MA0095.2/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CCATGATRTC
GCNGCCATCTTG--
 A C G T A C G T A C G T A C G T A G T C A G T C G T C A A G C T A C T G C G T A A C G T T C G A A G C T T A G C
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T

PB0126.1_Gata5_2/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CCATGATRTC------
NNNCTGATATCTCNNNN
 A C G T A G T C A G T C G T C A A G C T A C T G C G T A A C G T T C G A A G C T T A G C A C G T A C G T A C G T A C G T A C G T A C G T
T G C A T G A C C T G A G A T C G C A T C T A G G T C A C A G T G T C A A C G T G T A C C A G T G A T C C A G T T A C G A C G T A G T C

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CCATGATRTC
NCCTTATCTG
 A G T C A G T C G T C A A G C T A C T G C G T A A C G T T C G A A G C T T A G C
A G C T A G T C A T G C A C G T A C G T C G T A A C G T A G T C C G A T A T C G

Sox2/MA0143.3/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCATGATRTC
CCTTTGTT--
 A G T C A G T C G T C A A G C T A C T G C G T A A C G T T C G A A G C T T A G C
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CCATGATRTC
ANCAGGATGT-
 A C G T A G T C A G T C G T C A A G C T A C T G C G T A A C G T T C G A A G C T T A G C
C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T A C G T

Gata4/MA0482.1/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CCATGATRTC--
-TCTTATCTCCC
 A G T C A G T C G T C A A G C T A C T G C G T A A C G T T C G A A G C T T A G C A C G T A C G T
A C G T A G C T A T G C A G C T A C G T G T C A A C G T A G T C C G A T A T G C G A T C A G T C

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCATGATRTC
NNCTTATCTN
 A G T C A G T C G T C A A G C T A C T G C G T A A C G T T C G A A G C T T A G C
A G C T A G T C A T G C A G C T A C G T C G T A A C G T A G T C C G A T A T G C