Information for 14-CCAAGGAGCYGGA (Motif 28)

A G T C G T A C C G T A C G T A A C T G A C T G C G T A A C T G A G T C A G T C C T A G A C T G C G T A
Reverse Opposite:
A C G T A G T C A G T C C T A G A C T G A G T C A C G T A G T C A G T C A C G T A C G T A C T G A C T G
p-value:1e-8
log p-value:-2.038e+01
Information Content per bp:1.942
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets67.5 +/- 18.1bp
Average Position of motif in Background63.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CCAAGGAGCYGGA
---CGGAGC----
 A G T C G T A C C G T A C G T A A C T G A C T G C G T A A C T G A G T C A G T C C T A G A C T G C G T A
A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T

PB0077.1_Spdef_1/Jaspar

Match Rank:2
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CCAAGGAGCYGGA-----
--AANNATCCGGATGTNN
 A G T C G T A C C G T A C G T A A C T G A C T G C G T A A C T G A G T C A G T C C T A G A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C G A C T G A C T G A C G T A C G T A G A C T T A G C T G A C A C T G A C T G C G T A G C A T T C A G G A C T C T G A A G T C

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:3
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CCAAGGAGCYGGA--------
-GAAGTANCACGAATNMRAGT
 A G T C G T A C C G T A C G T A A C T G A C T G C G T A A C T G A G T C A G T C C T A G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T

NFYB/MA0502.1/Jaspar

Match Rank:4
Score:0.54
Offset:-7
Orientation:forward strand
Alignment:-------CCAAGGAGCYGGA
AAATGGACCAATCAG-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C C G T A C G T A A C T G A C T G C G T A A C T G A G T C A G T C C T A G A C T G C G T A
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T A C G T A C G T A C G T

REST/MA0138.2/Jaspar

Match Rank:5
Score:0.53
Offset:-8
Orientation:reverse strand
Alignment:--------CCAAGGAGCYGGA
GGCGCTGTCCATGGTGCTGAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C C G T A C G T A A C T G A C T G C G T A A C T G A G T C A G T C C T A G A C T G C G T A
C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

NFY(CCAAT)/Promoter/Homer

Match Rank:6
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CCAAGGAGCYGGA
AGCCAATCGG-----
 A C G T A C G T A G T C G T A C C G T A C G T A A C T G A C T G C G T A A C T G A G T C A G T C C T A G A C T G C G T A
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T A C G T A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:7
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----CCAAGGAGCYGGA-
TGGACCAATCAGCACTCT
 A C G T A C G T A C G T A C G T A G T C G T A C C G T A C G T A A C T G A C T G C G T A A C T G A G T C A G T C C T A G A C T G C G T A A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:CCAAGGAGCYGGA---
------ANCAGGATGT
 A G T C G T A C C G T A C G T A A C T G A C T G C G T A A C T G A G T C A G T C C T A G A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.52
Offset:5
Orientation:forward strand
Alignment:CCAAGGAGCYGGA
-----CAGCC---
 A G T C G T A C C G T A C G T A A C T G A C T G C G T A A C T G A G T C A G T C C T A G A C T G C G T A
A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CCAAGGAGCYGGA-
TCAGNGAGCGTGAC
 A G T C G T A C C G T A C G T A A C T G A C T G C G T A A C T G A G T C A G T C C T A G A C T G C G T A A C G T
A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C