Information for 14-CAGAGAATACTCATTA (Motif 19)

A G T C T C G A T C A G C G T A A C T G T C G A C T G A C G A T G C T A G T A C C G A T G A T C C G T A G C A T A C G T T G C A
Reverse Opposite:
A C G T G T C A C G T A A C G T C A T G C G T A A C T G C G A T C G T A A G C T A C G T G T A C A C G T A G T C A C G T C T A G
p-value:1e-10
log p-value:-2.411e+01
Information Content per bp:1.731
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets35.2 +/- 21.7bp
Average Position of motif in Background83.9 +/- 5.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0152.1_Pou6f1_2/Jaspar

Match Rank:1
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CAGAGAATACTCATTA-----
----GCAACCTCATTATNNNN
 A G T C T C G A T C A G C G T A A C T G T C G A C T G A C G A T G C T A G T A C C G A T G A T C C G T A G C A T A C G T T G C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G G T A C G T C A C G T A A T G C G T A C A C G T G T A C C G T A A C G T C G A T C G T A C G A T A T C G C G A T C A G T A G C T

PH0151.1_Pou6f1_1/Jaspar

Match Rank:2
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CAGAGAATACTCATTA-----
----NNNACCTCATTATCNTN
 A G T C T C G A T C A G C G T A A C T G T C G A C T G A C G A T G C T A G T A C C G A T G A T C C G T A G C A T A C G T T G C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G G A T C G T C A C G T A T A C G G T A C A C G T G T A C C G T A C G A T C G A T C G T A C G A T A T G C A C T G C G A T A G T C

POU6F2/MA0793.1/Jaspar

Match Rank:3
Score:0.59
Offset:7
Orientation:forward strand
Alignment:CAGAGAATACTCATTA-
-------AGCTCATTAT
 A G T C T C G A T C A G C G T A A C T G T C G A C T G A C G A T G C T A G T A C C G A T G A T C C G T A G C A T A C G T T G C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CAGAGAATACTCATTA
----GAATATTCAT--
 A G T C T C G A T C A G C G T A A C T G T C G A C T G A C G A T G C T A G T A C C G A T G A T C C G T A G C A T A C G T T G C A
A C G T A C G T A C G T A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:5
Score:0.57
Offset:8
Orientation:reverse strand
Alignment:CAGAGAATACTCATTA
--------NCTAATTA
 A G T C T C G A T C A G C G T A A C T G T C G A C T G A C G A T G C T A G T A C C G A T G A T C C G T A G C A T A C G T T G C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A

NOTO/MA0710.1/Jaspar

Match Rank:6
Score:0.56
Offset:8
Orientation:forward strand
Alignment:CAGAGAATACTCATTA--
--------GCTAATTAGC
 A G T C T C G A T C A G C G T A A C T G T C G A C T G A C G A T G C T A G T A C C G A T G A T C C G T A G C A T A C G T T G C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G G A T C G C A T G T C A C G T A A C G T C A G T C T G A T C A G A T G C

MEOX1/MA0661.1/Jaspar

Match Rank:7
Score:0.56
Offset:8
Orientation:forward strand
Alignment:CAGAGAATACTCATTA--
--------GCTAATTAAC
 A G T C T C G A T C A G C G T A A C T G T C G A C T G A C G A T G C T A G T A C C G A T G A T C C G T A G C A T A C G T T G C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A G C G A C T T G C A C G T A G A C T A C G T C T G A G T C A T A G C

PH0031.1_Evx1/Jaspar

Match Rank:8
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CAGAGAATACTCATTA------
-----AGAACTAATTAGTGGAC
 A G T C T C G A T C A G C G T A A C T G T C G A C T G A C G A T G C T A G T A C C G A T G A T C C G T A G C A T A C G T T G C A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A T C A G G C T A T C G A A T G C G A C T G T C A G T C A A C G T A C G T C T G A T A C G A G C T A T C G T A C G C G T A T A G C

PB0138.1_Irf4_2/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CAGAGAATACTCATTA
GNNACCGAGAATNNN-----
 A C G T A C G T A C G T A C G T A G T C T C G A T C A G C G T A A C T G T C G A C T G A C G A T G C T A G T A C C G A T G A T C C G T A G C A T A C G T T G C A
A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T A C G T A C G T A C G T A C G T A C G T

LHX2/MA0700.1/Jaspar

Match Rank:10
Score:0.55
Offset:8
Orientation:forward strand
Alignment:CAGAGAATACTCATTA--
--------ACTAATTAAC
 A G T C T C G A T C A G C G T A A C T G T C G A C T G A C G A T G C T A G T A C C G A T G A T C C G T A G C A T A C G T T G C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C