Information for 13-CCCAATGTCCTCT (Motif 23)

A G T C A G T C A G T C C G T A C G T A A C G T A C T G C G A T A G T C A G T C A C G T A G T C A G C T
Reverse Opposite:
C T G A A C T G C G T A A C T G A C T G C G T A A G T C C G T A A C G T A C G T A C T G C T A G A C T G
p-value:1e-4
log p-value:-1.055e+01
Information Content per bp:1.942
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif1.71%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.8 +/- 27.4bp
Average Position of motif in Background63.4 +/- 16.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:1
Score:0.63
Offset:-7
Orientation:reverse strand
Alignment:-------CCCAATGTCCTCT
NNNTGAACTCNNTGACCTCN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G T C C G T A C G T A A C G T A C T G C G A T A G T C A G T C A C G T A G T C A G C T
G T A C G A T C G T C A G C A T T C A G G T C A G T C A G T A C A G C T A G T C C G T A T A C G G C A T T A C G T G C A G T A C G A T C G A C T A G T C G A C T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:CCCAATGTCCTCT
-----TGACCTYA
 A G T C A G T C A G T C C G T A C G T A A C G T A C T G C G A T A G T C A G T C A C G T A G T C A G C T
A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

NR2F1/MA0017.2/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CCCAATGTCCTCT-
-CNNTTGACCTTTG
 A G T C A G T C A G T C C G T A C G T A A C G T A C T G C G A T A G T C A G T C A C G T A G T C A G C T A C G T
A C G T G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:CCCAATGTCCTCT
-----TGACCYCT
 A G T C A G T C A G T C C G T A C G T A A C G T A C T G C G A T A G T C A G T C A C G T A G T C A G C T
A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:5
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CCCAATGTCCTCT
TGACCCAGTGACCTAC
 A C G T A C G T A C G T A G T C A G T C A G T C C G T A C G T A A C G T A C T G C G A T A G T C A G T C A C G T A G T C A G C T
G C A T T A C G G C T A A T G C G T A C A G T C T G C A T A C G C G A T C A T G T G C A T G A C G A T C G A C T T C G A T A G C

Sox6/MA0515.1/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CCCAATGTCCTCT
-CCATTGTTTT--
 A G T C A G T C A G T C C G T A C G T A A C G T A C T G C G A T A G T C A G T C A C G T A G T C A G C T
A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CCCAATGTCCTCT
TGTTCCCATTGTGTACT
 A C G T A C G T A C G T A C G T A G T C A G T C A G T C C G T A C G T A A C G T A C T G C G A T A G T C A G T C A C G T A G T C A G C T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCCAATGTCCTCT
NCCATTGTTC---
 A G T C A G T C A G T C C G T A C G T A A C G T A C T G C G A T A G T C A G T C A C G T A G T C A G C T
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T A C G T

HINFP/MA0131.2/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CCCAATGTCCTCT-
--CAACGTCCGCGG
 A G T C A G T C A G T C C G T A C G T A A C G T A C T G C G A T A G T C A G T C A C G T A G T C A G C T A C G T
A C G T A C G T A T G C T G C A T C G A A T G C A T C G A C G T A T G C A G T C A T C G A T G C C A T G A C T G

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CCCAATGTCCTCT
AGGTCANTGACCTN-
 A C G T A C G T A G T C A G T C A G T C C G T A C G T A A C G T A C T G C G A T A G T C A G T C A C G T A G T C A G C T
T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C A C G T