Information for 4-TTTATAWGCCTTT (Motif 11)

A C G T A G C T A C G T G T C A A C G T T C G A C G A T A C T G T A G C A G T C A C G T A C G T C G A T
Reverse Opposite:
C G T A G T C A C G T A C T A G A T C G G T A C G C T A A C G T C G T A A C G T G T C A C T G A C G T A
p-value:1e-7
log p-value:-1.701e+01
Information Content per bp:1.752
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif5.13%
Number of Background Sequences with motif76.7
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets57.0 +/- 21.6bp
Average Position of motif in Background49.5 +/- 24.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TTTATAWGCCTTT
TTTTATKRGG----
 A C G T A C G T A G C T A C G T G T C A A C G T T C G A C G A T A C T G T A G C A G T C A C G T A C G T C G A T
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TTTATAWGCCTTT
TTTTATTRGN----
 A C G T A C G T A G C T A C G T G T C A A C G T T C G A C G A T A C T G T A G C A G T C A C G T A C G T C G A T
C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TTTATAWGCCTTT
NNNNTTGTGTGCTTNN
 A C G T A C G T A C G T A C G T A G C T A C G T G T C A A C G T T C G A C G A T A C T G T A G C A G T C A C G T A C G T C G A T
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

HOXA13/MA0650.1/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TTTATAWGCCTTT
TTTTTATTGG-----
 A C G T A C G T A C G T A G C T A C G T G T C A A C G T T C G A C G A T A C T G T A G C A G T C A C G T A C G T C G A T
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TTTATAWGCCTTT
NTTTTATTGG-----
 A C G T A C G T A C G T A G C T A C G T G T C A A C G T T C G A C G A T A C T G T A G C A G T C A C G T A C G T C G A T
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---TTTATAWGCCTTT
DGWTTTATGRCN----
 A C G T A C G T A C G T A C G T A G C T A C G T G T C A A C G T T C G A C G A T A C T G T A G C A G T C A C G T A C G T C G A T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T A C G T A C G T A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TTTATAWGCCTTT
NAATTTTACGAGNTNN-
 A C G T A C G T A C G T A C G T A C G T A G C T A C G T G T C A A C G T T C G A C G A T A C T G T A G C A G T C A C G T A C G T C G A T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:8
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----TTTATAWGCCTTT
NNAATTTTATTGGNTN--
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T G T C A A C G T T C G A C G A T A C T G T A G C A G T C A C G T A C G T C G A T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T A C G T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:9
Score:0.57
Offset:-8
Orientation:reverse strand
Alignment:--------TTTATAWGCCTTT
NNNNNNCTTTTATAN------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T G T C A A C G T T C G A C G A T A C T G T A G C A G T C A C G T A C G T C G A T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T A C G T A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TTTATAWGCCTTT
NTTTTATTGG-----
 A C G T A C G T A C G T A G C T A C G T G T C A A C G T T C G A C G A T A C T G T A G C A G T C A C G T A C G T C G A T
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T