Information for 1-YCTMYCAAACYYTYSC (Motif 1)

A G C T A G T C A C G T G T A C A G T C A G T C C G T A C G T A G T C A A G T C G A T C G A C T A C G T A G T C A T G C A G T C
Reverse Opposite:
C T A G A T C G T C A G G T C A C T G A C T A G A C T G C A G T C G A T A C G T A C T G C T A G A C T G C G T A A C T G C T G A
p-value:1e-15
log p-value:-3.499e+01
Information Content per bp:1.818
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif4.27%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.8 +/- 25.7bp
Average Position of motif in Background26.4 +/- 2.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0140.1_Pknox1/Jaspar

Match Rank:1
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----YCTMYCAAACYYTYSC
AAAGACCTGTCAATCC-----
 A C G T A C G T A C G T A C G T A C G T A G C T A G T C A C G T G T A C A G T C A G T C C G T A C G T A G T C A A G T C G A T C G A C T A C G T A G T C A T G C A G T C
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:2
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:YCTMYCAAACYYTYSC
GCTGTCAA--------
 A G C T A G T C A C G T G T A C A G T C A G T C C G T A C G T A G T C A A G T C G A T C G A C T A C G T A G T C A T G C A G T C
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0105.1_Meis3/Jaspar

Match Rank:3
Score:0.50
Offset:-5
Orientation:forward strand
Alignment:-----YCTMYCAAACYYTYSC
AATTACCTGTCAATAC-----
 A C G T A C G T A C G T A C G T A C G T A G C T A G T C A C G T G T A C A G T C A G T C C G T A C G T A G T C A A G T C G A T C G A C T A C G T A G T C A T G C A G T C
C G T A C T G A C G A T A C G T C T G A A T G C G A T C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G C A G T A C A C G T A C G T A C G T A C G T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:4
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---YCTMYCAAACYYTYSC
AAACCTCGTAAAATTT---
 A C G T A C G T A C G T A G C T A G T C A C G T G T A C A G T C A G T C C G T A C G T A G T C A A G T C G A T C G A C T A C G T A G T C A T G C A G T C
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T A C G T A C G T A C G T

PH0104.1_Meis2/Jaspar

Match Rank:5
Score:0.49
Offset:-5
Orientation:forward strand
Alignment:-----YCTMYCAAACYYTYSC
AAAGACCTGTCAATAC-----
 A C G T A C G T A C G T A C G T A C G T A G C T A G T C A C G T G T A C A G T C A G T C C G T A C G T A G T C A A G T C G A T C G A C T A C G T A G T C A T G C A G T C
G C T A C G T A T C A G A T C G C T G A A T G C G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T G T C A A G T C A C G T A C G T A C G T A C G T A C G T

PH0102.1_Meis1/Jaspar

Match Rank:6
Score:0.49
Offset:-5
Orientation:forward strand
Alignment:-----YCTMYCAAACYYTYSC
AACGAGCTGTCAATAC-----
 A C G T A C G T A C G T A C G T A C G T A G C T A G T C A C G T G T A C A G T C A G T C C G T A C G T A G T C A A G T C G A T C G A C T A C G T A G T C A T G C A G T C
C G T A C G T A T A C G A T C G C T G A A T C G T G A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A G A T C A C G T A C G T A C G T A C G T A C G T

PH0170.1_Tgif2/Jaspar

Match Rank:7
Score:0.49
Offset:-5
Orientation:forward strand
Alignment:-----YCTMYCAAACYYTYSC
AACTAGCTGTCAATAC-----
 A C G T A C G T A C G T A C G T A C G T A G C T A G T C A C G T G T A C A G T C A G T C C G T A C G T A G T C A A G T C G A T C G A C T A C G T A G T C A T G C A G T C
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C A C G T A C G T A C G T A C G T A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:8
Score:0.48
Offset:-3
Orientation:forward strand
Alignment:---YCTMYCAAACYYTYSC
AAAGCTCGTAAAATTT---
 A C G T A C G T A C G T A G C T A G T C A C G T G T A C A G T C A G T C C G T A C G T A G T C A A G T C G A T C G A C T A C G T A G T C A T G C A G T C
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T A C G T A C G T A C G T

TBX21/MA0690.1/Jaspar

Match Rank:9
Score:0.48
Offset:3
Orientation:reverse strand
Alignment:YCTMYCAAACYYTYSC
---TTCACACCTT---
 A G C T A G T C A C G T G T A C A G T C A G T C C G T A C G T A G T C A A G T C G A T C G A C T A C G T A G T C A T G C A G T C
A C G T A C G T A C G T C G A T A G C T T G A C C T G A G T A C T C G A T G A C G A T C G A C T G A C T A C G T A C G T A C G T

EOMES/MA0800.1/Jaspar

Match Rank:10
Score:0.48
Offset:0
Orientation:reverse strand
Alignment:YCTMYCAAACYYTYSC
NTTTTCACACCTT---
 A G C T A G T C A C G T G T A C A G T C A G T C C G T A C G T A G T C A A G T C G A T C G A C T A C G T A G T C A T G C A G T C
C T G A G C A T C A G T C G A T A G C T T G A C C T G A A G T C T C G A T G A C G A T C G A C T G A C T A C G T A C G T A C G T