Information for 7-CAGTCAGACATGA (Motif 9)

A G T C C G T A C A T G A G C T A G T C C G T A A T C G G T C A G T A C G C T A A C G T C T A G G T C A
Reverse Opposite:
A C G T G A T C T G C A C A G T A C T G A C G T A T G C A C G T A C T G C T G A G A T C A C G T A C T G
p-value:1e-13
log p-value:-3.153e+01
Information Content per bp:1.778
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.62%
Number of Background Sequences with motif31.9
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets53.7 +/- 26.8bp
Average Position of motif in Background56.9 +/- 20.9bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-CAGTCAGACATGA-
SCAGYCADGCATGAC
 A C G T A G T C C G T A C A T G A G C T A G T C C G T A A T C G G T C A G T A C G C T A A C G T C T A G G T C A A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CAGTCAGACATGA--
CAAATCCAGACATCACA
 A C G T A C G T A G T C C G T A C A T G A G C T A G T C C G T A A T C G G T C A G T A C G C T A A C G T C T A G G T C A A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CAGTCAGACATGA--
GCAGCCAAGCGTGACN
 A C G T A G T C C G T A C A T G A G C T A G T C C G T A A T C G G T C A G T A C G C T A A C G T C T A G G T C A A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CAGTCAGACATGA
---CCAGACAG--
 A G T C C G T A C A T G A G C T A G T C C G T A A T C G G T C A G T A C G C T A A C G T C T A G G T C A
A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CAGTCAGACATGA
---BCAGACWA--
 A G T C C G T A C A T G A G C T A G T C C G T A A T C G G T C A G T A C G C T A A C G T C T A G G T C A
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CAGTCAGACATGA
---CCAGACRSVB
 A G T C C G T A C A T G A G C T A G T C C G T A A T C G G T C A G T A C G C T A A C G T C T A G G T C A
A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CAGTCAGACATGA
ATGCCAGACN---
 A G T C C G T A C A T G A G C T A G T C C G T A A T C G G T C A G T A C G C T A A C G T C T A G G T C A
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CAGTCAGACATGA
AGGTGHCAGACA---
 A C G T A C G T A G T C C G T A C A T G A G C T A G T C C G T A A T C G G T C A G T A C G C T A A C G T C T A G G T C A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T

PAX9/MA0781.1/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CAGTCAGACATGA--
TGCAGTCATGCGTGACG
 A C G T A C G T A G T C C G T A C A T G A G C T A G T C C G T A A T C G G T C A G T A C G C T A A C G T C T A G G T C A A C G T A C G T
C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G

PAX1/MA0779.1/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CAGTCAGACATGA--
NGCANTCATGCGTGACG
 A C G T A C G T A G T C C G T A C A T G A G C T A G T C C G T A A T C G G T C A G T A C G C T A A C G T C T A G G T C A A C G T A C G T
C A G T A C T G G T A C C T G A A T C G A G C T T A G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A G T A C T A C G