Information for 6-CTCCTAGTGGCAG (Motif 6)

A G T C A G C T A G T C G T A C C A G T C T G A A T C G A C G T A C T G A C T G A G T C G T C A A C T G
Reverse Opposite:
A G T C A C G T A C T G A G T C G T A C C G T A A T G C A G C T G C T A A C T G A C T G C T G A C T A G
p-value:1e-11
log p-value:-2.651e+01
Information Content per bp:1.822
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif13.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets50.3 +/- 26.7bp
Average Position of motif in Background46.8 +/- 35.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------CTCCTAGTGGCAG
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G C T A G T C G T A C C A G T C T G A A T C G A C G T A C T G A C T G A G T C G T C A A C T G
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.57
Offset:-7
Orientation:forward strand
Alignment:-------CTCCTAGTGGCAG
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G C T A G T C G T A C C A G T C T G A A T C G A C G T A C T G A C T G A G T C G T C A A C T G
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:3
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:CTCCTAGTGGCAG--
-----VBTGWCAGCB
 A G T C A G C T A G T C G T A C C A G T C T G A A T C G A C G T A C T G A C T G A G T C G T C A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.55
Offset:6
Orientation:forward strand
Alignment:CTCCTAGTGGCAG
------TTGGCA-
 A G T C A G C T A G T C G T A C C A G T C T G A A T C G A C G T A C T G A C T G A G T C G T C A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CTCCTAGTGGCAG---
----AGGTGHCAGACA
 A G T C A G C T A G T C G T A C C A G T C T G A A T C G A C G T A C T G A C T G A G T C G T C A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.55
Offset:-9
Orientation:forward strand
Alignment:---------CTCCTAGTGGCAG
CNNBRGCGCCCCCTGSTGGC--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G C T A G T C G T A C C A G T C T G A A T C G A C G T A C T G A C T G A G T C G T C A A C T G
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:CTCCTAGTGGCAG-
-----NTTGGCANN
 A G T C A G C T A G T C G T A C C A G T C T G A A T C G A C G T A C T G A C T G A G T C G T C A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

Myb/MA0100.2/Jaspar

Match Rank:8
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:CTCCTAGTGGCAG----
-------TGGCAGTTGN
 A G T C A G C T A G T C G T A C C A G T C T G A A T C G A C G T A C T G A C T G A G T C G T C A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G

THAP1/MA0597.1/Jaspar

Match Rank:9
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CTCCTAGTGGCAG
----TNNGGGCAG
 A G T C A G C T A G T C G T A C C A G T C T G A A T C G A C G T A C T G A C T G A G T C G T C A A C T G
A C G T A C G T A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.54
Offset:6
Orientation:forward strand
Alignment:CTCCTAGTGGCAG-
------TTGCCAAG
 A G T C A G C T A G T C G T A C C A G T C T G A A T C G A C G T A C T G A C T G A G T C G T C A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G