Information for 6-AGGGCAGCACAGCCCC (Motif 7)

C G T A A C T G T A C G A T C G A G T C C G T A A T C G A T G C T C G A A G T C C G T A A C T G G T A C T A G C A G T C A G T C
Reverse Opposite:
A C T G A C T G A C T G A C T G A G T C A C G T A C T G A C G T A T C G A T G C A C G T A C T G A T G C A G T C A G T C A C G T
p-value:1e-13
log p-value:-3.088e+01
Information Content per bp:1.853
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.8 +/- 24.9bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:AGGGCAGCACAGCCCC
-------CACAGN---
 C G T A A C T G T A C G A T C G A G T C C G T A A T C G A T G C T C G A A G T C C G T A A C T G G T A C T A G C A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T

Sp1(Zf)/Promoter/Homer

Match Rank:2
Score:0.55
Offset:5
Orientation:forward strand
Alignment:AGGGCAGCACAGCCCC-
-----GGCCCCGCCCCC
 C G T A A C T G T A C G A T C G A G T C C G T A A T C G A T G C T C G A A G T C C G T A A C T G G T A C T A G C A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T T A C G C T A G A T G C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C A G T C

POL003.1_GC-box/Jaspar

Match Rank:3
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:AGGGCAGCACAGCCCC--
----NAGCCCCGCCCCCN
 C G T A A C T G T A C G A T C G A G T C C G T A A T C G A T G C T C G A A G T C C G T A A C T G G T A C T A G C A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T G T A C T C G A T C A G G T A C G A T C T G A C G A T C C A T G A G T C A G T C A G T C G T A C G A T C G C A T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---AGGGCAGCACAGCCCC
CAAAGGTCAG---------
 A C G T A C G T A C G T C G T A A C T G T A C G A T C G A G T C C G T A A T C G A T G C T C G A A G T C C G T A A C T G G T A C T A G C A G T C A G T C
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0110.1_Bcl6b_2/Jaspar

Match Rank:5
Score:0.51
Offset:5
Orientation:forward strand
Alignment:AGGGCAGCACAGCCCC-----
-----ATCCCCGCCCCTAAAA
 C G T A A C T G T A C G A T C G A G T C C G T A A T C G A T G C T C G A A G T C C G T A A C T G G T A C T A G C A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T C A A C G T A T G C A T G C A G T C G A T C C T A G G A T C T G A C A T G C A G T C C G A T G C T A G T C A G C T A T G C A

THAP1/MA0597.1/Jaspar

Match Rank:6
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--AGGGCAGCACAGCCCC
TNNGGGCAG---------
 A C G T A C G T C G T A A C T G T A C G A T C G A G T C C G T A A T C G A T G C T C G A A G T C C G T A A C T G G T A C T A G C A G T C A G T C
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:7
Score:0.50
Offset:-5
Orientation:reverse strand
Alignment:-----AGGGCAGCACAGCCCC
NNNNTTGGGCACNNCN-----
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G T A C G A T C G A G T C C G T A A T C G A T G C T C G A A G T C C G T A A C T G G T A C T A G C A G T C A G T C
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:8
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--AGGGCAGCACAGCCCC
TRAGGTCA----------
 A C G T A C G T C G T A A C T G T A C G A T C G A G T C C G T A A T C G A T G C T C G A A G T C C G T A A C T G G T A C T A G C A G T C A G T C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:9
Score:0.49
Offset:2
Orientation:forward strand
Alignment:AGGGCAGCACAGCCCC--
--AGCGGCACACACGCAA
 C G T A A C T G T A C G A T C G A G T C C G T A A T C G A T G C T C G A A G T C C G T A A C T G G T A C T A G C A G T C A G T C A C G T A C G T
A C G T A C G T C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:AGGGCAGCACAGCCCC
---AAACCACAGC---
 C G T A A C T G T A C G A T C G A G T C C G T A A T C G A T G C T C G A A G T C C G T A A C T G G T A C T A G C A G T C A G T C
A C G T A C G T A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T