Information for 7-MARAAGYAGGCAW (Motif 6)

T G A C C G T A C T G A C G T A C G T A A C T G A G T C C G T A A C T G A C T G A G T C C G T A C G T A
Reverse Opposite:
C G A T A C G T A C T G A G T C A G T C A C G T C T A G A G T C A C G T A C G T A G C T A C G T A C T G
p-value:1e-13
log p-value:-3.025e+01
Information Content per bp:1.872
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets65.8 +/- 18.7bp
Average Position of motif in Background42.3 +/- 11.5bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.60
Offset:6
Orientation:forward strand
Alignment:MARAAGYAGGCAW----
------AAGGCAAGTGT
 T G A C C G T A C T G A C G T A C G T A A C T G A G T C C G T A A C T G A C T G A G T C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:MARAAGYAGGCAW
----GGTTGGCAT
 T G A C C G T A C T G A C G T A C G T A A C T G A G T C C G T A A C T G A C T G A G T C C G T A C G T A
A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

HIC2/MA0738.1/Jaspar

Match Rank:3
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:MARAAGYAGGCAW
----NGTGGGCAT
 T G A C C G T A C T G A C G T A C G T A A C T G A G T C C G T A A C T G A C T G A G T C C G T A C G T A
A C G T A C G T A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T

PB0029.1_Hic1_1/Jaspar

Match Rank:4
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:MARAAGYAGGCAW---
NGTAGGTTGGCATNNN
 T G A C C G T A C T G A C G T A C G T A A C T G A G T C C G T A A C T G A C T G A G T C C G T A C G T A A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:MARAAGYAGGCAW
-----BCAGACWA
 T G A C C G T A C T G A C G T A C G T A A C T G A G T C C G T A A C T G A C T G A G T C C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----MARAAGYAGGCAW---
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T T G A C C G T A C T G A C G T A C G T A A C T G A G T C C G T A A C T G A C T G A G T C C G T A C G T A A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:7
Score:0.53
Offset:3
Orientation:forward strand
Alignment:MARAAGYAGGCAW
---TBGCACGCAA
 T G A C C G T A C T G A C G T A C G T A A C T G A G T C C G T A A C T G A C T G A G T C C G T A C G T A
A C G T A C G T A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

PH0170.1_Tgif2/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:MARAAGYAGGCAW---
AACTAGCTGTCAATAC
 T G A C C G T A C T G A C G T A C G T A A C T G A G T C C G T A A C T G A C T G A G T C C G T A C G T A A C G T A C G T A C G T
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C

PB0205.1_Zic1_2/Jaspar

Match Rank:9
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--MARAAGYAGGCAW
CCACACAGCAGGAGA
 A C G T A C G T T G A C C G T A C T G A C G T A C G T A A C T G A G T C C G T A A C T G A C T G A G T C C G T A C G T A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:MARAAGYAGGCAW-
----NNTTGGCANN
 T G A C C G T A C T G A C G T A C G T A A C T G A G T C C G T A A C T G A C T G A G T C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C