Information for 12-SWCTTKCTAAGGS (Motif 14)

A T G C C G T A A G T C A C G T A C G T A C G T A G T C A C G T G T C A C G T A A C T G A C T G A T C G
Reverse Opposite:
A T G C A G T C A G T C C G A T A C G T C G T A A C T G G T C A C G T A C G T A A C T G C G A T T A C G
p-value:1e-10
log p-value:-2.452e+01
Information Content per bp:1.871
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.1 +/- 26.8bp
Average Position of motif in Background73.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0054.1_Rfx3_1/Jaspar

Match Rank:1
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----SWCTTKCTAAGGS-----
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A T G C C G T A A G T C A C G T A C G T A C G T A G T C A C G T G T C A C G T A A C T G A C T G A T C G A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-SWCTTKCTAAGGS-
NNCGTTGCTATGGNN
 A C G T A T G C C G T A A G T C A C G T A C G T A C G T A G T C A C G T G T C A C G T A A C T G A C T G A T C G A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:SWCTTKCTAAGGS
CTGTTGCTAGGS-
 A T G C C G T A A G T C A C G T A C G T A C G T A G T C A C G T G T C A C G T A A C T G A C T G A T C G
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-SWCTTKCTAAGGS-
NCCGTTGCTANGNGN
 A C G T A T G C C G T A A G T C A C G T A C G T A C G T A G T C A C G T G T C A C G T A A C T G A C T G A T C G A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

TATA-Box(TBP)/Promoter/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:SWCTTKCTAAGGS
GNCTATAAAAGG-
 A T G C C G T A A G T C A C G T A C G T A C G T A G T C A C G T G T C A C G T A A C T G A C T G A T C G
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T

PB0194.1_Zbtb12_2/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:SWCTTKCTAAGGS--
AGNGTTCTAATGANN
 A T G C C G T A A G T C A C G T A C G T A C G T A G T C A C G T G T C A C G T A A C T G A C T G A T C G A C G T A C G T
G C T A T C A G T A G C C A T G C A G T C A G T G T A C A G C T G C T A G C T A A G C T T A C G C T G A A C G T C G T A

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:7
Score:0.58
Offset:6
Orientation:forward strand
Alignment:SWCTTKCTAAGGS-
------CTAATKGV
 A T G C C G T A A G T C A C G T A C G T A C G T A G T C A C G T G T C A C G T A A C T G A C T G A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C

Rfx1/MA0509.1/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:SWCTTKCTAAGGS---
--GTTGCCATGGNAAC
 A T G C C G T A A G T C A C G T A C G T A C G T A G T C A C G T G T C A C G T A A C T G A C T G A T C G A C G T A C G T A C G T
A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer

Match Rank:9
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:SWCTTKCTAAGGS-
----TTCTNMGGAA
 A T G C C G T A A G T C A C G T A C G T A C G T A G T C A C G T G T C A C G T A A C T G A C T G A T C G A C G T
A C G T A C G T A C G T A C G T C A G T G C A T A T G C G A C T C T A G T G C A C T A G C T A G G C T A C T G A

HLTF/MA0109.1/Jaspar

Match Rank:10
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:SWCTTKCTAAGGS-
----NNATAAGGNN
 A T G C C G T A A G T C A C G T A C G T A C G T A G T C A C G T G T C A C G T A A C T G A C T G A T C G A C G T
A C G T A C G T A C G T A C G T C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T