Information for 9-CTYCAGCCAATSG (Motif 12)

A T G C G A C T A G T C A T G C C G T A A C T G A G T C A T G C C G T A G C T A A C G T T A G C T A C G
Reverse Opposite:
A T G C A T C G C G T A C G A T A C G T A T C G A C T G A G T C G A C T T A C G T C A G C T G A T A C G
p-value:1e-12
log p-value:-2.779e+01
Information Content per bp:1.693
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.33%
Number of Background Sequences with motif135.6
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets51.0 +/- 25.2bp
Average Position of motif in Background50.9 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.85
Offset:1
Orientation:forward strand
Alignment:CTYCAGCCAATSG
-ACTAGCCAATCA
 A T G C G A C T A G T C A T G C C G T A A C T G A G T C A T G C C G T A G C T A A C G T T A G C T A C G
A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.85
Offset:4
Orientation:forward strand
Alignment:CTYCAGCCAATSG-
----AGCCAATCGG
 A T G C G A C T A G T C A T G C C G T A A C T G A G T C A T G C C G T A G C T A A C G T T A G C T A C G A C G T
A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-CTYCAGCCAATSG-
AAATGGACCAATCAG
 A C G T A T G C G A C T A G T C A T G C C G T A A C T G A G T C A T G C C G T A G C T A A C G T T A G C T A C G A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.74
Offset:4
Orientation:reverse strand
Alignment:CTYCAGCCAATSG
----TGCCAA---
 A T G C G A C T A G T C A T G C C G T A A C T G A G T C A T G C C G T A G C T A A C G T T A G C T A C G
A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.72
Offset:2
Orientation:forward strand
Alignment:CTYCAGCCAATSG
--CGTGCCAAG--
 A T G C G A C T A G T C A T G C C G T A A C T G A G T C A T G C C G T A G C T A A C G T T A G C T A C G
A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CTYCAGCCAATSG
--BCAGACWA---
 A T G C G A C T A G T C A T G C C G T A A C T G A G T C A T G C C G T A G C T A A C G T T A G C T A C G
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:7
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CTYCAGCCAATSG-------
--TGGACCAATCAGCACTCT
 A T G C G A C T A G T C A T G C C G T A A C T G A G T C A T G C C G T A G C T A A C G T T A G C T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CTYCAGCCAATSG
--GGTGCCAAGT-
 A T G C G A C T A G T C A T G C C G T A A C T G A G T C A T G C C G T A G C T A A C G T T A G C T A C G
A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:9
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CTYCAGCCAATSG-
TACGCCCCGCCACTCTG
 A C G T A C G T A C G T A T G C G A C T A G T C A T G C C G T A A C T G A G T C A T G C C G T A G C T A A C G T T A G C T A C G A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CTYCAGCCAATSG
---CAGCC-----
 A T G C G A C T A G T C A T G C C G T A A C T G A G T C A T G C C G T A G C T A A C G T T A G C T A C G
A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T