Information for 19-GGTCTCATTTTTC (Motif 20)

A C T G A T C G A C G T A G T C A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C
Reverse Opposite:
A C T G C G T A C G T A C G T A C G T A C G T A C G A T A C T G G T C A A C T G C G T A A T G C A G T C
p-value:1e-9
log p-value:-2.140e+01
Information Content per bp:1.924
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets39.8 +/- 30.6bp
Average Position of motif in Background86.2 +/- 13.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GGTCTCATTTTTC
-GKVTCADRTTWC
 A C T G A T C G A C G T A G T C A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C
A C G T C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C

PH0164.1_Six4/Jaspar

Match Rank:2
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----GGTCTCATTTTTC
TNNNNGGTGTCATNTNT-
 A C G T A C G T A C G T A C G T A C G T A C T G A T C G A C G T A G T C A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GGTCTCATTTTTC
-GKMTCADRTTWC
 A C T G A T C G A C G T A G T C A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C
A C G T C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C

STAT1::STAT2/MA0517.1/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GGTCTCATTTTTC
TCAGTTTCATTTTCC
 A C G T A C G T A C T G A T C G A C G T A G T C A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C
C A G T G A T C C T G A T A C G A G C T G C A T A G C T A G T C C T G A A C G T A G C T G C A T A G C T G A T C A G T C

IRF2/MA0051.1/Jaspar

Match Rank:5
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GGTCTCATTTTTC
GTTTTGCTTTCACTTTCC
 A C G T A C G T A C G T A C G T A C G T A C T G A T C G A C G T A G T C A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C
C A T G C G A T C G A T G C A T A G C T T C A G A T C G A C G T A C G T A C G T A G T C C T A G A G T C A C G T C G A T A C G T A G T C T A G C

IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GGTCTCATTTTTC
AGTTTCAKTTTC-
 A C T G A T C G A C G T A G T C A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C
C T G A T A C G G C A T A G C T A G C T A G T C T C G A A C T G C A G T A G C T A G C T G A T C A C G T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:7
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GGTCTCATTTTTC-----
----TTTTTTTTCNNGTN
 A C T G A T C G A C G T A G T C A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G C A T C A G T C G A T A G C T A G C T G C A T G C A T A G T C T G A C G T C A A C T G G A C T C G T A

PB0033.1_Irf3_1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GGTCTCATTTTTC
CAGTTTCGNTTCTN
 A C G T A C T G A T C G A C G T A G T C A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C
A G T C C T G A A T C G C A G T C G A T A C G T A G T C A T C G C A T G C G A T G C A T G A T C G A C T T A G C

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:9
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GGTCTCATTTTTC-
----YCTTTGTTCC
 A C T G A T C G A C G T A G T C A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

PH0166.1_Six6_2/Jaspar

Match Rank:10
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GGTCTCATTTTTC
AATAGGGTATCAATATT-
 A C G T A C G T A C G T A C G T A C G T A C T G A T C G A C G T A G T C A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C
C T G A C G T A C G A T T C G A C T A G C A T G T C A G C A G T C T G A A C G T G A T C G C T A G C T A G A C T G C T A G A C T A C G T A C G T