Information for 10-GAGAAACTTTATT (Motif 16)

T A C G C G T A C A T G C G T A C G T A C T G A A T G C C A G T A G C T A G C T C G T A C A G T A G C T
Reverse Opposite:
C T G A G C T A C G A T C T G A C T G A G T C A T A C G A G C T G A C T C G A T G T A C G C A T A T G C
p-value:1e-9
log p-value:-2.114e+01
Information Content per bp:1.674
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.61%
Number of Background Sequences with motif87.6
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets47.9 +/- 24.6bp
Average Position of motif in Background55.3 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0075.1_Hoxd10/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GAGAAACTTTATT-----
-NTNAATTTTATTGNATT
 T A C G C G T A C A T G C G T A C G T A C T G A A T G C C A G T A G C T A G C T C G T A C A G T A G C T A C G T A C G T A C G T A C G T A C G T
A C G T C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:2
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GAGAAACTTTATT------
---NAATTTTATTACCNNN
 T A C G C G T A C A T G C G T A C G T A C T G A A T G C C A G T A G C T A G C T C G T A C A G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

PH0057.1_Hoxb13/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GAGAAACTTTATT-----
--NNAATTTTATTGGNTN
 T A C G C G T A C A T G C G T A C G T A C T G A A T G C C A G T A G C T A G C T C G T A C A G T A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:4
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GAGAAACTTTATT-----
--NNANTTTTATTGGNNN
 T A C G C G T A C A T G C G T A C G T A C T G A A T G C C A G T A G C T A G C T C G T A C A G T A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

CDX1/MA0878.1/Jaspar

Match Rank:5
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:GAGAAACTTTATT--
------TTTTATTGC
 T A C G C G T A C A T G C G T A C G T A C T G A A T G C C A G T A G C T A G C T C G T A C A G T A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

HOXA13/MA0650.1/Jaspar

Match Rank:6
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:GAGAAACTTTATT--
-----TTTTTATTGG
 T A C G C G T A C A T G C G T A C G T A C T G A A T G C C A G T A G C T A G C T C G T A C A G T A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G

PH0046.1_Hoxa10/Jaspar

Match Rank:7
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GAGAAACTTTATT-----
--TNAATTTTATTACCTN
 T A C G C G T A C A T G C G T A C G T A C T G A A T G C C A G T A G C T A G C T C G T A C A G T A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:8
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GAGAAACTTTATT-
--GWAAYHTGAKMC
 T A C G C G T A C A T G C G T A C G T A C T G A A T G C C A G T A G C T A G C T C G T A C A G T A G C T A C G T
A C G T A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

HOXA10/MA0899.1/Jaspar

Match Rank:9
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GAGAAACTTTATT---
-----NTTTTATTACN
 T A C G C G T A C A T G C G T A C G T A C T G A A T G C C A G T A G C T A G C T C G T A C A G T A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:10
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GAGAAACTTTATT--
-----NTTTTATGAC
 T A C G C G T A C A T G C G T A C G T A C T G A A T G C C A G T A G C T A G C T C G T A C A G T A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C