Information for 2-AGAAGAAGAT (Motif 2)

C G T A T A C G T G C A G C T A A T C G C T G A C G T A T C A G T G C A C G A T
Reverse Opposite:
G C T A A C G T A G T C G C A T G A C T T A G C C G A T A C G T A T G C G C A T
p-value:1e-20
log p-value:-4.749e+01
Information Content per bp:1.653
Number of Target Sequences with motif91.0
Percentage of Target Sequences with motif10.58%
Number of Background Sequences with motif1585.4
Percentage of Background Sequences with motif3.36%
Average Position of motif in Targets46.8 +/- 25.1bp
Average Position of motif in Background49.6 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:AGAAGAAGAT
---NGAAGC-
 C G T A T A C G T G C A G C T A A T C G C T G A C G T A T C A G T G C A C G A T
A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T

Mecom/MA0029.1/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGAAGAAGAT----
AAGATAAGATAACA
 C G T A T A C G T G C A G C T A A T C G C T G A C G T A T C A G T G C A C G A T A C G T A C G T A C G T A C G T
C T G A C G T A A C T G C G T A G A C T C G T A C T G A A C T G C G T A A G C T G C T A C T G A A C G T G T C A

SPIB/MA0081.1/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGAAGAAGAT
AGAGGAA---
 C G T A T A C G T G C A G C T A A T C G C T G A C G T A T C A G T G C A C G A T
C G T A T A C G T G C A C T A G C A T G C G T A C G T A A C G T A C G T A C G T

Crx/MA0467.1/Jaspar

Match Rank:4
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AGAAGAAGAT---
--AAGAGGATTAG
 C G T A T A C G T G C A G C T A A T C G C T G A C G T A T C A G T G C A C G A T A C G T A C G T A C G T
A C G T A C G T T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

PB0063.1_Sox13_1/Jaspar

Match Rank:5
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AGAAGAAGAT---
TTAAGAACAATAAATT
 A C G T A C G T A C G T C G T A T A C G T G C A G C T A A T C G C T G A C G T A T C A G T G C A C G A T A C G T A C G T A C G T
C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AGAAGAAGAT
AGAGGAAGTG
 C G T A T A C G T G C A G C T A A T C G C T G A C G T A T C A G T G C A C G A T
C G T A T A C G T C G A A C T G A C T G C G T A C G T A T A C G A G C T T A C G

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:AGAAGAAGAT---
--AAGGATATNTN
 C G T A T A C G T G C A G C T A A T C G C T G A C G T A T C A G T G C A C G A T A C G T A C G T A C G T
A C G T A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:8
Score:0.54
Offset:6
Orientation:forward strand
Alignment:AGAAGAAGAT----
------AGATAASR
 C G T A T A C G T G C A G C T A A T C G C T G A C G T A T C A G T G C A C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A A T C G G C T A G A C T G C T A T C G A T A G C T C G A

PB0058.1_Sfpi1_1/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---AGAAGAAGAT-
TTAAGAGGAAGTTA
 A C G T A C G T A C G T C G T A T A C G T G C A G C T A A T C G C T G A C G T A T C A G T G C A C G A T A C G T
A G C T C G A T C G T A C G T A T C A G T C G A C T A G A C T G C G T A C G T A T A C G G A C T C G A T G T A C

PB0122.1_Foxk1_2/Jaspar

Match Rank:10
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---AGAAGAAGAT--
CAAACAACAACACCT
 A C G T A C G T A C G T C G T A T A C G T G C A G C T A A T C G C T G A C G T A T C A G T G C A C G A T A C G T A C G T
G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T