Information for 9-CATCACGGCC (Motif 9)

A G T C G T C A C G A T A T G C G T C A G T A C A C T G A C T G G A T C A G T C
Reverse Opposite:
A C T G C A T G G T A C G T A C A C T G A C G T A T C G G C T A A C G T A C T G
p-value:1e-9
log p-value:-2.100e+01
Information Content per bp:1.845
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.45%
Number of Background Sequences with motif57.3
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets65.6 +/- 25.3bp
Average Position of motif in Background51.2 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax2/MA0067.1/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CATCACGGCC
AGTCACGC--
 A G T C G T C A C G A T A T G C G T C A G T A C A C T G A C T G G A T C A G T C
G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:2
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CATCACGGCC
--GCACGTNC
 A G T C G T C A C G A T A T G C G T C A G T A C A C T G A C T G G A T C A G T C
A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:3
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CATCACGGCC-
-NTCAAGGTCA
 A G T C G T C A C G A T A T G C G T C A G T A C A C T G A C T G G A T C A G T C A C G T
A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CATCACGGCC
AAATCACTGC-
 A C G T A G T C G T C A C G A T A T G C G T C A G T A C A C T G A C T G G A T C A G T C
T G C A C G T A G T C A A G C T A G T C G C T A T A G C C G A T C T A G G A T C A C G T

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:5
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CATCACGGCC
--YAACBGCC
 A G T C G T C A C G A T A T G C G T C A G T A C A C T G A C T G G A T C A G T C
A C G T A C G T A G C T C G T A C G T A A G T C A G T C A C T G G A T C G A T C

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CATCACGGCC-
-BTCAAGGTCA
 A G T C G T C A C G A T A T G C G T C A G T A C A C T G A C T G G A T C A G T C A C G T
A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CATCACGGCC--
--GCACGTACCC
 A G T C G T C A C G A T A T G C G T C A G T A C A C T G A C T G G A T C A G T C A C G T A C G T
A C G T A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:8
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CATCACGGCC---
---CAAGGHCANV
 A G T C G T C A C G A T A T G C G T C A G T A C A C T G A C T G G A T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Nr5a2/MA0505.1/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CATCACGGCC---
AAGTTCAAGGTCAGC
 A C G T A C G T A G T C G T C A C G A T A T G C G T C A G T A C A C T G A C T G G A T C A G T C A C G T A C G T A C G T
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

ESRRB/MA0141.3/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CATCACGGCC---
--TCAAGGTCATA
 A G T C G T C A C G A T A T G C G T C A G T A C A C T G A C T G G A T C A G T C A C G T A C G T A C G T
A C G T A C G T G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A