Information for 5-CAAGMRSCASACT (Motif 7)

G T A C C G T A C T G A A C T G G T C A C T G A A T C G A G T C C G T A A T C G C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G A C G T A T G C A C G T A C T G A T G C A G C T A C G T A G T C A G C T A C G T A C T G
p-value:1e-13
log p-value:-3.067e+01
Information Content per bp:1.873
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.7 +/- 25.6bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CAAGMRSCASACT
-AGGTGHCAGACA
 G T A C C G T A C T G A A C T G G T C A C T G A A T C G A G T C C G T A A T C G C G T A A G T C A C G T
A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:CAAGMRSCASACT-
------BCAGACWA
 G T A C C G T A C T G A A C T G G T C A C T G A A T C G A G T C C G T A A T C G C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:CAAGMRSCASACT---
------CCAGACRSVB
 G T A C C G T A C T G A A C T G G T C A C T G A A T C G A G T C C G T A A T C G C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:CAAGMRSCASACT-
------CCAGACAG
 G T A C C G T A C T G A A C T G G T C A C T G A A T C G A G T C C G T A A T C G C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

PB0130.1_Gm397_2/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CAAGMRSCASACT-----
--AGCGGCACACACGCAA
 G T A C C G T A C T G A A C T G G T C A C T G A A T C G A G T C C G T A A T C G C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CAAGMRSCASACT-
-AGGTGNCAGACAG
 G T A C C G T A C T G A A C T G G T C A C T G A A T C G A G T C C G T A A T C G C G T A A G T C A C G T A C G T
A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

PB0208.1_Zscan4_2/Jaspar

Match Rank:7
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CAAGMRSCASACT-----
--CGAAGCACACAAAATA
 G T A C C G T A C T G A A C T G G T C A C T G A A T C G A G T C C G T A A T C G C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CAAGMRSCASACT-----
-CAAATCCAGACATCACA
 G T A C C G T A C T G A A C T G G T C A C T G A A T C G A G T C C G T A A T C G C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

NFYA/MA0060.2/Jaspar

Match Rank:9
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----CAAGMRSCASACT
TGGACCAATCAGCACTCT
 A C G T A C G T A C G T A C G T A C G T G T A C C G T A C T G A A C T G G T C A C T G A A T C G A G T C C G T A A T C G C G T A A G T C A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----CAAGMRSCASACT
NGNTCTAGAACCNGV--
 A C G T A C G T A C G T A C G T G T A C C G T A C T G A A C T G G T C A C T G A A T C G A G T C C G T A A T C G C G T A A G T C A C G T
C T G A T C A G G C T A A G C T A G T C G A C T C T G A C T A G T G C A C T G A A G T C G T A C G A T C A C T G T C G A A C G T A C G T