Information for 4-SCAGCCSCGGCGG (Motif 9)

T A C G A G T C C G T A A C T G T A G C A G T C A T G C G T A C T A C G A T C G A T G C A C T G C A T G
Reverse Opposite:
G T A C T G A C A T C G A T G C A T G C A C T G T A C G A C T G A T C G A G T C G C A T A C T G A T G C
p-value:1e-9
log p-value:-2.280e+01
Information Content per bp:1.677
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif3.77%
Number of Background Sequences with motif440.9
Percentage of Background Sequences with motif0.90%
Average Position of motif in Targets55.0 +/- 23.0bp
Average Position of motif in Background50.5 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0151.1_Myf6_2/Jaspar

Match Rank:1
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----SCAGCCSCGGCGG
AGCAACAGCCGCACC--
 A C G T A C G T A C G T A C G T T A C G A G T C C G T A A C T G T A G C A G T C A T G C G T A C T A C G A T C G A T G C A C T G C A T G
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C A C G T A C G T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:SCAGCCSCGGCGG--
--TGCCCTGAGGGCA
 T A C G A G T C C G T A A C T G T A G C A G T C A T G C G T A C T A C G A T C G A T G C A C T G C A T G A C G T A C G T
A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:SCAGCCSCGGCGG--
--TGCCCTNAGGGCA
 T A C G A G T C C G T A A C T G T A G C A G T C A T G C G T A C T A C G A T C G A T G C A C T G C A T G A C G T A C G T
A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:4
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:SCAGCCSCGGCGG--
--TGCCCTNAGGGCA
 T A C G A G T C C G T A A C T G T A G C A G T C A T G C G T A C T A C G A T C G A T G C A C T G C A T G A C G T A C G T
A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T T G A C T C G A T C A G A C T G A C T G A T G C C G T A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:SCAGCCSCGGCGG
CCAGACRSVB---
 T A C G A G T C C G T A A C T G T A G C A G T C A T G C G T A C T A C G A T C G A T G C A C T G C A T G
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:SCAGCCSCGGCGG-
--TGCCCNGGGGCA
 T A C G A G T C C G T A A C T G T A G C A G T C A T G C G T A C T A C G A T C G A T G C A C T G C A T G A C G T
A C G T A C G T G A C T T A C G T A G C A G T C A G T C A C T G T C A G T C A G T C A G A T C G A T G C C T G A

PB0103.1_Zic3_1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:SCAGCCSCGGCGG--
NCCCCCCCGGGGGGN
 T A C G A G T C C G T A A C T G T A G C A G T C A T G C G T A C T A C G A T C G A T G C A C T G C A T G A C G T A C G T
T C G A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G T A C G A C T G C A T G C A T G C A T G T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:SCAGCCSCGGCGG
BCAGACWA-----
 T A C G A G T C C G T A A C T G T A G C A G T C A T G C G T A C T A C G A T C G A T G C A C T G C A T G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

PB0102.1_Zic2_1/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:SCAGCCSCGGCGG--
ACCCCCCCGGGGGGN
 T A C G A G T C C G T A A C T G T A G C A G T C A T G C G T A C T A C G A T C G A T G C A C T G C A T G A C G T A C G T
T G C A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G A T C G A C T G C A T G C A T G C A T G T A C G

PB0010.1_Egr1_1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:SCAGCCSCGGCGG-
TCCGCCCCCGCATT
 T A C G A G T C C G T A A C T G T A G C A G T C A T G C G T A C T A C G A T C G A T G C A C T G C A T G A C G T
G A C T G T A C G A T C T C A G A G T C A T G C A G T C G T A C G A T C A C T G A G T C C G T A G A C T A C G T