Information for 2-CCAATGACAATGG (Motif 3)

A G T C A G T C C G T A C G T A A C G T A C T G C T G A G T A C C G T A C G T A A G C T C T A G A C T G
Reverse Opposite:
A G T C A G T C C T G A A C G T A C G T A C T G A G C T A G T C C G T A A C G T A C G T A C T G A C T G
p-value:1e-11
log p-value:-2.540e+01
Information Content per bp:1.933
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets61.2 +/- 14.2bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:CCAATGACAATGG
-----AACAAAGG
 A G T C A G T C C G T A C G T A A C G T A C T G C T G A G T A C C G T A C G T A A G C T C T A G A C T G
A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:CCAATGACAATGG
-----RACAAWGG
 A G T C A G T C C G T A C G T A A C G T A C T G C T G A G T A C C G T A C G T A A G C T C T A G A C T G
A C G T A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

Sox6/MA0515.1/Jaspar

Match Rank:3
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CCAATGACAATGG
---AAAACAATGG
 A G T C A G T C C G T A C G T A A C G T A C T G C T G A G T A C C G T A C G T A A G C T C T A G A C T G
A C G T A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

Sox17/MA0078.1/Jaspar

Match Rank:4
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:CCAATGACAATGG-
-----GACAATGNN
 A G T C A G T C C G T A C G T A A C G T A C T G C T G A G T A C C G T A C G T A A G C T C T A G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CCAATGACAATGG
---VRAACAATGG
 A G T C A G T C C G T A C G T A A C G T A C T G C T G A G T A C C G T A C G T A A G C T C T A G A C T G
A C G T A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:6
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CCAATGACAATGG
ACTAGCCAATCA------
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C T G C T G A G T A C C G T A C G T A A G C T C T A G A C T G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T A C G T A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CCAATGACAATGG
---RNAACAATGG
 A G T C A G T C C G T A C G T A A C G T A C T G C T G A G T A C C G T A C G T A A G C T C T A G A C T G
A C G T A C G T A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

NFY(CCAAT)/Promoter/Homer

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCAATGACAATGG
AGCCAATCGG-----
 A C G T A C G T A G T C A G T C C G T A C G T A A C G T A C T G C T G A G T A C C G T A C G T A A G C T C T A G A C T G
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:9
Score:0.61
Offset:4
Orientation:forward strand
Alignment:CCAATGACAATGG-
----RAACAATGGN
 A G T C A G T C C G T A C G T A A C G T A C T G C T G A G T A C C G T A C G T A A G C T C T A G A C T G A C G T
A C G T A C G T A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CCAATGACAATGG-
----GAACAATGGN
 A G T C A G T C C G T A C G T A A C G T A C T G C T G A G T A C C G T A C G T A A G C T C T A G A C T G A C G T
A C G T A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G