Information for 8-AACCTAATTAGAW (Motif 20)

C G T A G C T A G T A C G T A C A G C T C G T A C G T A A C G T C G A T C G T A A T C G C G T A C G A T
Reverse Opposite:
C G T A A C G T T A G C C G A T G C T A C G T A A C G T C G A T C T G A A C T G C A T G C A G T A C G T
p-value:1e-7
log p-value:-1.642e+01
Information Content per bp:1.743
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.26%
Number of Background Sequences with motif59.9
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets41.3 +/- 28.8bp
Average Position of motif in Background45.4 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0094.1_Lhx4/Jaspar

Match Rank:1
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--AACCTAATTAGAW--
CAAAGCTAATTAGNTTN
 A C G T A C G T C G T A G C T A G T A C G T A C A G C T C G T A C G T A A C G T C G A T C G T A A T C G C G T A C G A T A C G T A C G T
G A T C T G C A G C T A T G C A T A C G A T G C G A C T T C G A C T G A A G C T A G C T C T G A A T C G A G C T G C A T C A G T G T C A

VSX2/MA0726.1/Jaspar

Match Rank:2
Score:0.76
Offset:3
Orientation:forward strand
Alignment:AACCTAATTAGAW
---CTAATTAG--
 C G T A G C T A G T A C G T A C A G C T C G T A C G T A A C G T C G A T C G T A A T C G C G T A C G A T
A C G T A C G T A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G A C G T A C G T

PAX4/MA0068.2/Jaspar

Match Rank:3
Score:0.75
Offset:3
Orientation:forward strand
Alignment:AACCTAATTAGAW
---CTAATTAG--
 C G T A G C T A G T A C G T A C A G C T C G T A C G T A A C G T C G A T C G T A A T C G C G T A C G A T
A C G T A C G T A C G T A G T C C A G T G C T A C G T A A C G T G C A T G T C A T C A G A C G T A C G T

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:4
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:AACCTAATTAGAW
---YTAATTAVHT
 C G T A G C T A G T A C G T A C A G C T C G T A C G T A A C G T C G A T C G T A A T C G C G T A C G A T
A C G T A C G T A C G T A G T C G A C T T C G A C G T A A C G T A C G T C T G A T C G A G C A T G C A T

VSX1/MA0725.1/Jaspar

Match Rank:5
Score:0.75
Offset:3
Orientation:forward strand
Alignment:AACCTAATTAGAW
---CTAATTAT--
 C G T A G C T A G T A C G T A C A G C T C G T A C G T A A C G T C G A T C G T A A T C G C G T A C G A T
A C G T A C G T A C G T G A T C G A C T G T C A T C G A G A C T C A G T C T G A A C G T A C G T A C G T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:6
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:AACCTAATTAGAW
--NCTAATTA---
 C G T A G C T A G T A C G T A C A G C T C G T A C G T A A C G T C G A T C G T A A T C G C G T A C G A T
A C G T A C G T T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T A C G T A C G T

PH0052.1_Hoxa5/Jaspar

Match Rank:7
Score:0.74
Offset:0
Orientation:forward strand
Alignment:AACCTAATTAGAW---
ACGGTAATTAGCTCAG
 C G T A G C T A G T A C G T A C A G C T C G T A C G T A A C G T C G A T C G T A A T C G C G T A C G A T A C G T A C G T A C G T
T C G A T G A C C T A G A C T G G A C T G T C A G T C A A C G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A C T A G

ALX3/MA0634.1/Jaspar

Match Rank:8
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:AACCTAATTAGAW
--NNTAATTAGA-
 C G T A G C T A G T A C G T A C A G C T C G T A C G T A A C G T C G A T C G T A A T C G C G T A C G A T
A C G T A C G T A C G T A G C T C G A T C T G A C G T A C A G T G A C T C T G A T C A G C T G A A C G T

EN1/MA0027.2/Jaspar

Match Rank:9
Score:0.74
Offset:3
Orientation:forward strand
Alignment:AACCTAATTAGAW
---CTAATTAG--
 C G T A G C T A G T A C G T A C A G C T C G T A C G T A A C G T C G A T C G T A A T C G C G T A C G A T
A C G T A C G T A C G T A T G C G A C T T G C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T

Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer

Match Rank:10
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:AACCTAATTAGAW
---YTAATTARNN
 C G T A G C T A G T A C G T A C A G C T C G T A C G T A A C G T C G A T C G T A A T C G C G T A C G A T
A C G T A C G T A C G T A G T C G A C T T G C A G T C A A C G T A C G T C T G A T C A G G T A C G C A T