Information for 6-ATAAATTATC (Motif 15)

G T C A A C G T C G T A C G T A C T G A A C G T C A G T G T C A C G A T A G T C
Reverse Opposite:
C T A G C G T A A C G T G T C A C G T A G A C T A C G T C G A T T C G A C A G T
p-value:1e-9
log p-value:-2.121e+01
Information Content per bp:1.827
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.39%
Number of Background Sequences with motif187.5
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets58.2 +/- 27.2bp
Average Position of motif in Background48.4 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU4F1/MA0790.1/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-ATAAATTATC---
CATTAATTATTCAT
 A C G T G T C A A C G T C G T A C G T A C T G A A C G T C A G T G T C A C G A T A G T C A C G T A C G T A C G T
G T A C C T G A A G C T G C A T G C T A G C T A G C A T G C A T C G T A C G A T C A G T G A T C C T G A A G C T

Hoxc9/MA0485.1/Jaspar

Match Rank:2
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----ATAAATTATC
GGCCATAAATCAC-
 A C G T A C G T A C G T A C G T G T C A A C G T C G T A C G T A C T G A A C G T C A G T G T C A C G A T A G T C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T

POU4F3/MA0791.1/Jaspar

Match Rank:3
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---ATAAATTATC---
CTCATTAATTATGCAT
 A C G T A C G T A C G T G T C A A C G T C G T A C G T A C T G A A C G T C A G T G T C A C G A T A G T C A C G T A C G T A C G T
A G T C C A G T G T A C C T G A G A C T G C A T G C T A G C T A G C A T G C A T G C T A C G A T C A T G G A T C T C G A G A C T

Lhx3/MA0135.1/Jaspar

Match Rank:4
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--ATAAATTATC-
AAATTAATTAATC
 A C G T A C G T G T C A A C G T C G T A C G T A C T G A A C G T C A G T G T C A C G A T A G T C A C G T
C G T A T C G A C G T A A C G T A C G T C G T A C G T A G A C T A G C T G C T A C G T A G A C T A G T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:5
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----ATAAATTATC
GGCCATAAATCA--
 A C G T A C G T A C G T A C G T G T C A A C G T C G T A C G T A C T G A A C G T C A G T G T C A C G A T A G T C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T

Dlx1/MA0879.1/Jaspar

Match Rank:6
Score:0.69
Offset:0
Orientation:forward strand
Alignment:ATAAATTATC
CCTAATTATC
 G T C A A C G T C G T A C G T A C T G A A C G T C A G T G T C A C G A T A G T C
T G A C T G A C G A C T T G C A G C T A C G A T A C G T G C T A A C G T A T G C

Hoxa9/MA0594.1/Jaspar

Match Rank:7
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---ATAAATTATC
GCCATAAATCA--
 A C G T A C G T A C G T G T C A A C G T C G T A C G T A C T G A A C G T C A G T G T C A C G A T A G T C
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T

MF0010.1_Homeobox_class/Jaspar

Match Rank:8
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:ATAAATTATC
---AATTATT
 G T C A A C G T C G T A C G T A C T G A A C G T C A G T G T C A C G A T A G T C
A C G T A C G T A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T

HESX1/MA0894.1/Jaspar

Match Rank:9
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:ATAAATTATC
NCCAATTANC
 G T C A A C G T C G T A C G T A C T G A A C G T C A G T G T C A C G A T A G T C
C T A G A G T C G A T C C T G A G T C A A G C T G A C T G C T A C T A G A G T C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:10
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----ATAAATTATC
GGCCATAAATCA--
 A C G T A C G T A C G T A C G T G T C A A C G T C G T A C G T A C T G A A C G T C A G T G T C A C G A T A G T C
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T A C G T