Information for 3-TTTTATTGGAACAAAC (Motif 11)

A C G T A G C T A C G T C A G T C G T A A C G T A C G T A C T G A C T G C G T A C G T A G T A C T C G A C G T A C G T A G A T C
Reverse Opposite:
C T A G A C G T A C G T A C G T A C T G A C G T C G A T A G T C G T A C C G T A C G T A A C G T G C T A C G T A C T G A C G T A
p-value:1e-9
log p-value:-2.195e+01
Information Content per bp:1.907
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.6 +/- 11.3bp
Average Position of motif in Background37.8 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13/MA0901.1/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTGGAACAAAC
NTTTTATTGG-------
 A C G T A C G T A G C T A C G T C A G T C G T A A C G T A C G T A C T G A C T G C G T A C G T A G T A C T C G A C G T A C G T A G A T C
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:2
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATTGGAACAAAC
NNANTTTTATTGGNNN----
 A C G T A C G T A C G T A C G T A C G T A G C T A C G T C A G T C G T A A C G T A C G T A C T G A C T G C G T A C G T A G T A C T C G A C G T A C G T A G A T C
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G A C G T A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:3
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTGGAACAAAC
TTTTTATTGG-------
 A C G T A C G T A G C T A C G T C A G T C G T A A C G T A C G T A C T G A C T G C G T A C G T A G T A C T C G A C G T A C G T A G A T C
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:4
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTGGAACAAAC
NTTTTATTGG-------
 A C G T A C G T A G C T A C G T C A G T C G T A A C G T A C G T A C T G A C T G C G T A C G T A G T A C T C G A C G T A C G T A G A T C
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TTTTATTGGAACAAAC
TTTTATTRGN------
 A C G T A G C T A C G T C A G T C G T A A C G T A C G T A C T G A C T G C G T A C G T A G T A C T C G A C G T A C G T A G A T C
C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T A C G T A C G T A C G T A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:6
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATTGGAACAAAC
NNAATTTTATTGGNTN----
 A C G T A C G T A C G T A C G T A C G T A G C T A C G T C A G T C G T A A C G T A C G T A C T G A C T G C G T A C G T A G T A C T C G A C G T A C G T A G A T C
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T A C G T A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:7
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TTTTATTGGAACAAAC
TTTTATKRGG------
 A C G T A G C T A C G T C A G T C G T A A C G T A C G T A C T G A C T G C G T A C G T A G T A C T C G A C G T A C G T A G A T C
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

PB0116.1_Elf3_2/Jaspar

Match Rank:8
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----TTTTATTGGAACAAAC
GNATTTTTTTTTTGANC----
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T C A G T C G T A A C G T A C G T A C T G A C T G C G T A C G T A G T A C T C G A C G T A C G T A G A T C
C T A G G C T A C T G A A C G T C G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A T C A G T C A T G T G C A T C G A G T A C A C G T A C G T A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:9
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----TTTTATTGGAACAAAC
NTNAATTTTATTGNATT----
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T C A G T C G T A A C G T A C G T A C T G A C T G C G T A C G T A G T A C T C G A C G T A C G T A G A T C
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TTTTATTGGAACAAAC
TTTTATTGC-------
 A C G T A G C T A C G T C A G T C G T A A C G T A C G T A C T G A C T G C G T A C G T A G T A C T C G A C G T A C G T A G A T C
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T