Information for 10-GTAGGTCAGVTTGTGA (Motif 12)

A C T G G A C T C T G A A C T G A C T G A C G T T A G C C G T A C A T G T A C G G A C T A C G T C T A G A C G T A T C G G T C A
Reverse Opposite:
A C G T T A G C G T C A A G T C G T C A C G T A A G T C G A T C C G A T A C T G G T C A G T A C G T A C G A C T C G T A A G T C
p-value:1e-12
log p-value:-2.784e+01
Information Content per bp:1.696
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.56%
Number of Background Sequences with motif34.3
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets53.2 +/- 22.2bp
Average Position of motif in Background51.8 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GTAGGTCAGVTTGTGA
GTAGGTCACTGGGTCA
 A C T G G A C T C T G A A C T G A C T G A C G T T A G C C G T A C A T G T A C G G A C T A C G T C T A G A C G T A T C G G T C A
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GTAGGTCAGVTTGTGA
--AGGTCA--------
 A C T G G A C T C T G A A C T G A C T G A C G T T A G C C G T A C A T G T A C G G A C T A C G T C T A G A C G T A T C G G T C A
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:3
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GTAGGTCAGVTTGTGA
TATAAGTAGGTCAA-------
 A C G T A C G T A C G T A C G T A C G T A C T G G A C T C T G A A C T G A C T G A C G T T A G C C G T A C A T G T A C G G A C T A C G T C T A G A C G T A T C G G T C A
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:4
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GTAGGTCAGVTTGTGA-
--AGGTCACCCTGACCT
 A C T G G A C T C T G A A C T G A C T G A C G T T A G C C G T A C A T G T A C G G A C T A C G T C T A G A C G T A T C G G T C A A C G T
A C G T A C G T C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GTAGGTCAGVTTGTGA
AAYTAGGTCA--------
 A C G T A C G T A C T G G A C T C T G A A C T G A C T G A C G T T A G C C G T A C A T G T A C G G A C T A C G T C T A G A C G T A T C G G T C A
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GTAGGTCAGVTTGTGA
-GAGGTCAAAAGGTCA
 A C T G G A C T C T G A A C T G A C T G A C G T T A G C C G T A C A T G T A C G G A C T A C G T C T A G A C G T A T C G G T C A
A C G T T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A

RORA/MA0071.1/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GTAGGTCAGVTTGTGA
ATCAAGGTCA--------
 A C G T A C G T A C T G G A C T C T G A A C T G A C T G A C G T T A G C C G T A C A T G T A C G G A C T A C G T C T A G A C G T A T C G G T C A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Rarg/MA0859.1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GTAGGTCAGVTTGTGA-
-AAGGTCAAAAGGTCAA
 A C T G G A C T C T G A A C T G A C T G A C G T T A G C C G T A C A T G T A C G G A C T A C G T C T A G A C G T A T C G G T C A A C G T
A C G T T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A

RARA/MA0729.1/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GTAGGTCAGVTTGTGA---
-GAGGTCAAAAGGTCAATG
 A C T G G A C T C T G A A C T G A C T G A C G T T A G C C G T A C A T G T A C G G A C T A C G T C T A G A C G T A T C G G T C A A C G T A C G T A C G T
A C G T C T A G T C G A A C T G C A T G A G C T T A G C C T G A C G T A C G T A T G C A A C T G A C T G C G A T A G T C C T G A G C T A C A G T A C T G

Rarb/MA0857.1/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GTAGGTCAGVTTGTGA
AAAGGTCAAAAGGTCA
 A C T G G A C T C T G A A C T G A C T G A C G T T A G C C G T A C A T G T A C G G A C T A C G T C T A G A C G T A T C G G T C A
G C T A C T G A T C G A A C T G A C T G C A G T A T G C C T G A G C T A C T G A C T G A C T A G A C T G A G C T A G T C C T G A