Motif 26

Information for 17-CGTATACGAG (Motif 26)

Reverse Opposite:

p-value:	1e-1
log p-value:	-4.122e+00
Information Content per bp:	1.741
Number of Target Sequences with motif	1.0
Percentage of Target Sequences with motif	0.13%
Number of Background Sequences with motif	1.2
Percentage of Background Sequences with motif	0.00%
Average Position of motif in Targets	29.0 +/- 0.0bp
Average Position of motif in Background	56.6 +/- 19.5bp
Strand Bias (log2 ratio + to - strand density)	10.0
Multiplicity (# of sites on avg that occur together)	1.00
Motif File:	file (matrix) reverse opposite
SVG Files for Logos:	forward logo reverse opposite

Matches to Known Motifs

PH0048.1_Hoxa13/Jaspar

Match Rank:	1
Score:	0.66
Offset:	-2
Orientation:	reverse strand
Alignment:	--CGTATACGAG---- ANATTTTACGAGNNNN

HOXC13/MA0907.1/Jaspar

Match Rank:	2
Score:	0.65
Offset:	0
Orientation:	reverse strand
Alignment:	CGTATACGAG- NTTTTACGAGN

PB0106.1_Arid5a_2/Jaspar

Match Rank:	3
Score:	0.64
Offset:	-3
Orientation:	forward strand
Alignment:	---CGTATACGAG---- CATACAATACGAAATAA

PH0068.1_Hoxc13/Jaspar

Match Rank:	4
Score:	0.62
Offset:	-2
Orientation:	reverse strand
Alignment:	--CGTATACGAG---- NAATTTTACGAGNTNN

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:	5
Score:	0.58
Offset:	1
Orientation:	reverse strand
Alignment:	CGTATACGAG- -GGGTACGTGC

Hoxa11/MA0911.1/Jaspar

Match Rank:	6
Score:	0.57
Offset:	-1
Orientation:	reverse strand
Alignment:	-CGTATACGAG- ANTTTTACGACC

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:	7
Score:	0.56
Offset:	-4
Orientation:	reverse strand
Alignment:	----CGTATACGAG--- NTNNCGTATCCAAGTNN

HOXC11/MA0651.1/Jaspar

Match Rank:	8
Score:	0.55
Offset:	0
Orientation:	reverse strand
Alignment:	CGTATACGAG- NTTTTACGACC

PB0128.1_Gcm1_2/Jaspar

Match Rank:	9
Score:	0.55
Offset:	-2
Orientation:	forward strand
Alignment:	--CGTATACGAG----- TGCGCATAGGGGAGGAG

PH0077.1_Hoxd12/Jaspar

Match Rank:	10
Score:	0.55
Offset:	-3
Orientation:	reverse strand
Alignment:	---CGTATACGAG---- NNNATTTTACGACNNTN