Information for 17-CAGGCASGGGGGG (Motif 26)

A G T C C T G A A T C G A T C G A G T C C G T A T A G C C T A G A C T G C A T G T A C G A T C G A C T G
Reverse Opposite:
A G T C A T G C A G T C G T A C G T A C G A T C A T C G A C G T A C T G A T G C A T G C A G C T C T A G
p-value:1e-8
log p-value:-1.848e+01
Information Content per bp:1.797
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.32%
Number of Background Sequences with motif40.2
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets48.0 +/- 30.4bp
Average Position of motif in Background54.1 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CAGGCASGGGGGG
AAGGCAAGTGT--
 A G T C C T G A A T C G A T C G A G T C C G T A T A G C C T A G A C T G C A T G T A C G A T C G A C T G
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CAGGCASGGGGGG-
CAGGCCNNGGCCNN
 A G T C C T G A A T C G A T C G A G T C C G T A T A G C C T A G A C T G C A T G T A C G A T C G A C T G A C G T
A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CAGGCASGGGGGG------
YCAGGCWCAGTACCAGGCTC
 A C G T A G T C C T G A A T C G A T C G A G T C C G T A T A G C C T A G A C T G C A T G T A C G A T C G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A G T C T G A C G C T A C T A G C T A G G A T C G C A T A T G C C G T A C T A G C A G T T C G A A T G C A G T C C G T A C A T G C T A G G T A C G A C T A T G C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:4
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CAGGCASGGGGGG-
SCAGYCADGCATGAC
 A C G T A G T C C T G A A T C G A T C G A G T C C G T A T A G C C T A G A C T G C A T G T A C G A T C G A C T G A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PB0204.1_Zfp740_2/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CAGGCASGGGGGG-----
-ANTNCCGGGGGGAANTT
 A G T C C T G A A T C G A T C G A G T C C G T A T A G C C T A G A C T G C A T G T A C G A T C G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T C T G A A G T C G A C T G A C T T A G C A T G C T A C G T A C G A C T G C T A G C T A G C T A G C G T A G T C A G A C T G A C T G A C T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CAGGCASGGGGGG
BCAGACWA------
 A C G T A G T C C T G A A T C G A T C G A G T C C G T A T A G C C T A G A C T G C A T G T A C G A T C G A C T G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

HES5/MA0821.1/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CAGGCASGGGGGG
-TGGCACGTGCCG
 A G T C C T G A A T C G A T C G A G T C C G T A T A G C C T A G A C T G C A T G T A C G A T C G A C T G
A C G T G A C T T C A G T C A G A G T C C T G A A G T C C A T G A G C T A C T G A G T C A G T C C T A G

EGR1/MA0162.2/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CAGGCASGGGGGG---
--GGCGGGGGCGGGGG
 A G T C C T G A A T C G A T C G A G T C C G T A T A G C C T A G A C T G C A T G T A C G A T C G A C T G A C G T A C G T A C G T
A C G T A C G T A C T G T A C G G T A C C T A G C A T G T C A G C T A G A C T G G A T C C T A G C A T G T C A G C T A G T A C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CAGGCASGGGGGG
CCAGACAG------
 A C G T A G T C C T G A A T C G A T C G A G T C C G T A T A G C C T A G A C T G C A T G T A C G A T C G A C T G
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:10
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CAGGCASGGGGGG
TBGCACGCAA------
 A C G T A C G T A C G T A G T C C T G A A T C G A T C G A G T C C G T A T A G C C T A G A C T G C A T G T A C G A T C G A C T G
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T A C G T A C G T