Information for 3-CACCCTGGTTATGAGT (Motif 9)

T A G C G T C A T A G C G A T C G T A C A G C T A T C G C T A G A G C T C A G T G C T A A C G T T A C G C G T A C A T G G A C T
Reverse Opposite:
C G T A G T A C C G A T A T G C T G C A C G A T G T C A C T G A G A T C T A G C C T G A A C T G C T A G A T C G C A G T A C T G
p-value:1e-13
log p-value:-3.060e+01
Information Content per bp:1.671
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.77%
Number of Background Sequences with motif14.9
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets55.2 +/- 22.7bp
Average Position of motif in Background52.0 +/- 22.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0152.1_Pou6f1_2/Jaspar

Match Rank:1
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CACCCTGGTTATGAGT
GCAACCTCATTATNNNN
 A C G T T A G C G T C A T A G C G A T C G T A C A G C T A T C G C T A G A G C T C A G T G C T A A C G T T A C G C G T A C A T G G A C T
C A T G G T A C G T C A C G T A A T G C G T A C A C G T G T A C C G T A A C G T C G A T C G T A C G A T A T C G C G A T C A G T A G C T

PB0159.1_Rfx4_2/Jaspar

Match Rank:2
Score:0.50
Offset:0
Orientation:forward strand
Alignment:CACCCTGGTTATGAGT
TACCCTAGTTACCGA-
 T A G C G T C A T A G C G A T C G T A C A G C T A T C G C T A G A G C T C A G T G C T A A C G T T A C G C G T A C A T G G A C T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:3
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-CACCCTGGTTATGAGT
ACATCCTGNT-------
 A C G T T A G C G T C A T A G C G A T C G T A C A G C T A T C G C T A G A G C T C A G T G C T A A C G T T A C G C G T A C A T G G A C T
C T G A A T G C C G T A A C G T A G T C A G T C A C G T A C T G A T C G G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:4
Score:0.48
Offset:-5
Orientation:reverse strand
Alignment:-----CACCCTGGTTATGAGT
GGCCACACCCAN---------
 A C G T A C G T A C G T A C G T A C G T T A G C G T C A T A G C G A T C G T A C A G C T A T C G C T A G A G C T C A G T G C T A A C G T T A C G C G T A C A T G G A C T
C T A G C T A G T G A C A G T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Klf1/MA0493.1/Jaspar

Match Rank:5
Score:0.48
Offset:-5
Orientation:forward strand
Alignment:-----CACCCTGGTTATGAGT
GGCCACACCCA----------
 A C G T A C G T A C G T A C G T A C G T T A G C G T C A T A G C G A T C G T A C A G C T A T C G C T A G A G C T C A G T G C T A A C G T T A C G C G T A C A T G G A C T
C T A G T C A G T G A C G A T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0151.1_Pou6f1_1/Jaspar

Match Rank:6
Score:0.48
Offset:-1
Orientation:reverse strand
Alignment:-CACCCTGGTTATGAGT
NNNACCTCATTATCNTN
 A C G T T A G C G T C A T A G C G A T C G T A C A G C T A T C G C T A G A G C T C A G T G C T A A C G T T A C G C G T A C A T G G A C T
C A T G G A T C G T C A C G T A T A C G G T A C A C G T G T A C C G T A C G A T C G A T C G T A C G A T A T G C A C T G C G A T A G T C

BATF::JUN/MA0462.1/Jaspar

Match Rank:7
Score:0.47
Offset:7
Orientation:forward strand
Alignment:CACCCTGGTTATGAGT--
-------GAAATGACTCA
 T A G C G T C A T A G C G A T C G T A C A G C T A T C G C T A G A G C T C A G T G C T A A C G T T A C G C G T A C A T G G A C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G C T G A C G T A G T C A A C G T A C T G C G T A T A G C A C G T T G A C C G T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.46
Offset:0
Orientation:reverse strand
Alignment:CACCCTGGTTATGAGT
CCCCCTGCTGTG----
 T A G C G T C A T A G C G A T C G T A C A G C T A T C G C T A G A G C T C A G T G C T A A C G T T A C G C G T A C A T G G A C T
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T

PH0040.1_Hmbox1/Jaspar

Match Rank:9
Score:0.45
Offset:-1
Orientation:forward strand
Alignment:-CACCCTGGTTATGAGT
GAAAACTAGTTAACATC
 A C G T T A G C G T C A T A G C G A T C G T A C A G C T A T C G C T A G A G C T C A G T G C T A A C G T T A C G C G T A C A T G G A C T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

HMBOX1/MA0895.1/Jaspar

Match Rank:10
Score:0.45
Offset:3
Orientation:forward strand
Alignment:CACCCTGGTTATGAGT
---ACTAGTTAAC---
 T A G C G T C A T A G C G A T C G T A C A G C T A T C G C T A G A G C T C A G T G C T A A C G T T A C G C G T A C A T G G A C T
A C G T A C G T A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C A C G T A C G T A C G T