Information for 20-TGGCTGCCAA (Motif 26)

G A C T C T A G A T C G G A T C C G A T T C A G A G T C G A T C G C T A T G C A
Reverse Opposite:
A C G T C G A T C T A G T C A G A G T C C G T A C T A G T A G C G A T C C T G A
p-value:1e-8
log p-value:-1.891e+01
Information Content per bp:1.663
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif4.64%
Number of Background Sequences with motif263.2
Percentage of Background Sequences with motif1.45%
Average Position of motif in Targets47.3 +/- 28.2bp
Average Position of motif in Background48.6 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.71
Offset:2
Orientation:forward strand
Alignment:TGGCTGCCAA--
--GGTGCCAAGT
 G A C T C T A G A T C G G A T C C G A T T C A G A G T C G A T C G C T A T G C A A C G T A C G T
A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.69
Offset:3
Orientation:forward strand
Alignment:TGGCTGCCAA-
---TTGCCAAG
 G A C T C T A G A T C G G A T C C G A T T C A G A G T C G A T C G C T A T G C A A C G T
A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.68
Offset:2
Orientation:forward strand
Alignment:TGGCTGCCAA-
--CGTGCCAAG
 G A C T C T A G A T C G G A T C C G A T T C A G A G T C G A T C G C T A T G C A A C G T
A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:TGGCTGCCAA
----TGCCAA
 G A C T C T A G A T C G G A T C C G A T T C A G A G T C G A T C G C T A T G C A
A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TGGCTGCCAA
TWGTCTGV---
 A C G T G A C T C T A G A T C G G A T C C G A T T C A G A G T C G A T C G C T A T G C A
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:TGGCTGCCAA
--GCTGTCAA
 G A C T C T A G A T C G G A T C C G A T T C A G A G T C G A T C G C T A T G C A
A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TGGCTGCCAA--
TGTCTGDCACCT
 G A C T C T A G A T C G G A T C C G A T T C A G A G T C G A T C G C T A T G C A A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TGGCTGCCAA-
-VGCTGWCAVB
 G A C T C T A G A T C G G A T C C G A T T C A G A G T C G A T C G C T A T G C A A C G T
A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGGCTGCCAA--
CTGTCTGTCACCT
 A C G T G A C T C T A G A T C G G A T C C G A T T C A G A G T C G A T C G C T A T G C A A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

PH0170.1_Tgif2/Jaspar

Match Rank:10
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TGGCTGCCAA---
AACTAGCTGTCAATAC
 A C G T A C G T A C G T G A C T C T A G A T C G G A T C C G A T T C A G A G T C G A T C G C T A T G C A A C G T A C G T A C G T
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C