Information for 14-CTTGWMAAACAKK (Motif 19)

A G T C A C G T A C G T A C T G C G A T G T A C C G T A C G T A C G T A A G T C C G T A A C T G A C G T
Reverse Opposite:
G T C A G T A C C G A T A C T G A C G T A C G T A C G T A C T G C G T A A G T C C G T A C G T A C T A G
p-value:1e-11
log p-value:-2.590e+01
Information Content per bp:1.874
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.0 +/- 22.9bp
Average Position of motif in Background35.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTTGWMAAACAKK
GCTCGTAAAAA---
 A C G T A G T C A C G T A C G T A C T G C G A T G T A C C G T A C G T A C G T A A G T C C G T A A C T G A C G T
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A A C G T A C G T A C G T

PB0141.1_Isgf3g_2/Jaspar

Match Rank:2
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CTTGWMAAACAKK----
---GCAAAACATTACTA
 A G T C A C G T A C G T A C T G C G A T G T A C C G T A C G T A C G T A A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A

PH0048.1_Hoxa13/Jaspar

Match Rank:3
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CTTGWMAAACAKK
AAACCTCGTAAAATTT-
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G C G A T G T A C C G T A C G T A C G T A A G T C C G T A A C T G A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T A C G T

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:4
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CTTGWMAAACAKK
NNNVCTGWGYAAACASN
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G C G A T G T A C C G T A C G T A C G T A A G T C C G T A A C T G A C G T
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTTGWMAAACAKK
SCTGTCAVTCAV-
 A G T C A C G T A C G T A C T G C G A T G T A C C G T A C G T A C G T A A G T C C G T A A C T G A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

PB0145.1_Mafb_2/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CTTGWMAAACAKK
CAATTGCAAAAATAT
 A C G T A C G T A G T C A C G T A C G T A C T G C G A T G T A C C G T A C G T A C G T A A G T C C G T A A C T G A C G T
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T

PH0068.1_Hoxc13/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CTTGWMAAACAKK
AAAGCTCGTAAAATTT-
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G C G A T G T A C C G T A C G T A C G T A A G T C C G T A A C T G A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T A C G T

GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer

Match Rank:8
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CTTGWMAAACAKK---
VAAACYKGTHWAACMRGTTT
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G C G A T G T A C C G T A C G T A C G T A A G T C C G T A A C T G A C G T A C G T A C G T A C G T
T C G A C T G A C T G A C G T A T A G C G A C T C A T G T C A G G C A T G C A T C G T A C T G A C T G A A G T C G T A C C T A G A T C G G A C T G A C T A G C T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CTTGWMAAACAKK
CTTGGCAA-----
 A G T C A C G T A C G T A C T G C G A T G T A C C G T A C G T A C G T A A G T C C G T A A C T G A C G T
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTTGWMAAACAKK
NCTGTCAATCAN-
 A G T C A C G T A C G T A C T G C G A T G T A C C G T A C G T A C G T A A G T C C G T A A C T G A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T