Information for 13-CTACTAGCAT (Motif 14)

A G T C G A C T C T G A A T G C G A C T C G T A T C A G T A G C G T C A A C G T
Reverse Opposite:
T C G A C A G T A T C G A G T C G C A T C T G A T A C G G A C T C G T A T C A G
p-value:1e-11
log p-value:-2.636e+01
Information Content per bp:1.678
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif3.82%
Number of Background Sequences with motif133.2
Percentage of Background Sequences with motif0.73%
Average Position of motif in Targets52.2 +/- 26.8bp
Average Position of motif in Background52.9 +/- 34.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU3F4/MA0789.1/Jaspar

Match Rank:1
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CTACTAGCAT-
--ATTTGCATA
 A G T C G A C T C T G A A T G C G A C T C G T A T C A G T A G C G T C A A C G T A C G T
A C G T A C G T G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CTACTAGCAT--
--ATTTGCATAA
 A G T C G A C T C T G A A T G C G A C T C G T A T C A G T A G C G T C A A C G T A C G T A C G T
A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

POU5F1B/MA0792.1/Jaspar

Match Rank:3
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CTACTAGCAT-
--ATTTGCATA
 A G T C G A C T C T G A A T G C G A C T C G T A T C A G T A G C G T C A A C G T A C G T
A C G T A C G T G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CTACTAGCAT-
BTVATTWGCATA
 A C G T A G T C G A C T C T G A A T G C G A C T C G T A T C A G T A G C G T C A A C G T A C G T
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

PB0155.1_Osr2_2/Jaspar

Match Rank:5
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CTACTAGCAT-
ACTTGCTACCTACACC
 A C G T A C G T A C G T A C G T A C G T A G T C G A C T C T G A A T G C G A C T C G T A T C A G T A G C G T C A A C G T A C G T
C T G A G A T C G A C T G A C T T A C G A G T C G A C T G C T A G T A C G A T C G C A T T C G A G T A C C G T A A G C T T G A C

PB0181.1_Spdef_2/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CTACTAGCAT------
CTACTAGGATGTNNTN
 A G T C G A C T C T G A A T G C G A C T C G T A T C A G T A G C G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G T C G C A T C G T A T G A C C G A T T C G A T A C G C A T G C G T A G A C T C T A G G A C T C G A T T C G A G C A T G A T C

PH0144.1_Pou2f2/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CTACTAGCAT----
TNTAATTTGCATANNN
 A C G T A C G T A G T C G A C T C T G A A T G C G A C T C G T A T C A G T A G C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A

Pou2f3/MA0627.1/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CTACTAGCAT----
TNTAATTTGCATACNA
 A C G T A C G T A G T C G A C T C T G A A T G C G A C T C G T A T C A G T A G C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:9
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CTACTAGCAT----
TNTAATTTGCATACNA
 A C G T A C G T A G T C G A C T C T G A A T G C G A C T C G T A T C A G T A G C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

POU2F1/MA0785.1/Jaspar

Match Rank:10
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CTACTAGCAT---
-AATTTGCATANT
 A G T C G A C T C T G A A T G C G A C T C G T A T C A G T A G C G T C A A C G T A C G T A C G T A C G T
A C G T G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T