Information for 9-RATAATACTGATC (Motif 11)

C T A G C G T A G A C T C G T A C G T A A C G T C G T A A G T C A C G T A C T G C G T A A C G T A G T C
Reverse Opposite:
A C T G T C G A A C G T T G A C C G T A C T A G A C G T G T C A A C G T A C G T C T G A A C G T A G T C
p-value:1e-12
log p-value:-2.957e+01
Information Content per bp:1.805
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.36%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets49.6 +/- 28.3bp
Average Position of motif in Background63.3 +/- 26.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.59
Offset:1
Orientation:forward strand
Alignment:RATAATACTGATC--
-CTAATATTGCTAAA
 C T A G C G T A G A C T C G T A C G T A A C G T C G T A A G T C A C G T A C T G C G T A A C G T A G T C A C G T A C G T
A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:RATAATACTGATC--
-CTAATATTGCTAAA
 C T A G C G T A G A C T C G T A C G T A A C G T C G T A A G T C A C G T A C T G C G T A A C G T A G T C A C G T A C G T
A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:RATAATACTGATC
--GAATATTCAT-
 C T A G C G T A G A C T C G T A C G T A A C G T C G T A A G T C A C G T A C T G C G T A A C G T A G T C
A C G T A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T

PB0064.1_Sox14_1/Jaspar

Match Rank:4
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---RATAATACTGATC
GCTAATTATAATTATC
 A C G T A C G T A C G T C T A G C G T A G A C T C G T A C G T A A C G T C G T A A G T C A C G T A C T G C G T A A C G T A G T C
C A T G G A T C G A C T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C A G T G T A C

PB0023.1_Gata6_1/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:RATAATACTGATC------
--NNANTCTTATCTNNNNN
 C T A G C G T A G A C T C G T A C G T A A C G T C G T A A G T C A C G T A C T G C G T A A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G T C C G T A G C T A G A C T A C G T A T G C C G A T C G A T C T G A C G A T G T A C C G A T G T A C A C G T G C T A C A G T G C T A

MF0011.1_HMG_class/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:RATAATACTGATC
AACAAT-------
 C T A G C G T A G A C T C G T A C G T A A C G T C G T A A G T C A C G T A C T G C G T A A C G T A G T C
T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0063.1_Sox13_1/Jaspar

Match Rank:7
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----RATAATACTGATC
TTAAGAACAATAAATT--
 A C G T A C G T A C G T A C G T A C G T C T A G C G T A G A C T C G T A C G T A A C G T C G T A A G T C A C G T A C T G C G T A A C G T A G T C
C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:8
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----RATAATACTGATC
AATGCAATAAAATTTAT-
 A C G T A C G T A C G T A C G T A C G T C T A G C G T A G A C T C G T A C G T A A C G T C G T A A G T C A C G T A C T G C G T A A C G T A G T C
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T A C G T

PB0074.1_Sox8_1/Jaspar

Match Rank:9
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----RATAATACTGATC
TNNAGAACAATANATNN-
 A C G T A C G T A C G T A C G T A C G T C T A G C G T A G A C T C G T A C G T A A C G T C G T A A G T C A C G T A C T G C G T A A C G T A G T C
G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C A C G T

PB0079.1_Sry_1/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---RATAATACTGATC
TATAATTATAATATTC
 A C G T A C G T A C G T C T A G C G T A G A C T C G T A C G T A A C G T C G T A A G T C A C G T A C T G C G T A A C G T A G T C
A C G T G C T A C A G T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C T G A C G A T C A G T T G A C