Information for 3-TGGCTGMGAGCACGCA (Motif 12)

C G A T A C T G A T C G T G A C C A G T A T C G G T C A A C T G C T G A A C T G A T G C G T C A T A G C C T A G A G T C C G T A
Reverse Opposite:
C G A T T C A G A G T C A C T G A C G T A T C G A G T C G A C T T A G C C A G T A T G C G T C A A C T G A T G C A G T C C G T A
p-value:1e-8
log p-value:-2.046e+01
Information Content per bp:1.710
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif6.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.5 +/- 18.6bp
Average Position of motif in Background52.5 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGGCTGMGAGCACGCA
TGGCAGNCTGCCAG--
 C G A T A C T G A T C G T G A C C A G T A T C G G T C A A C T G C T G A A C T G A T G C G T C A T A G C C T A G A G T C C G T A
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TGGCTGMGAGCACGCA
CTTGGCANNNTGCCAA--
 A C G T A C G T C G A T A C T G A T C G T G A C C A G T A T C G G T C A A C T G C T G A A C T G A T G C G T C A T A G C C T A G A G T C C G T A
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:3
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TGGCTGMGAGCACGCA
TGGCACCATGCCAA--
 C G A T A C T G A T C G T G A C C A G T A T C G G T C A A C T G C T G A A C T G A T G C G T C A T A G C C T A G A G T C C G T A
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T A C G T

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:4
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TGGCTGMGAGCACGCA
TGCCCNGGGGCA----
 C G A T A C T G A T C G T G A C C A G T A T C G G T C A A C T G C T G A A C T G A T G C G T C A T A G C C T A G A G T C C G T A
G A C T T A C G T A G C A G T C A G T C A C T G T C A G T C A G T C A G A T C G A T G C C T G A A C G T A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:5
Score:0.53
Offset:7
Orientation:forward strand
Alignment:TGGCTGMGAGCACGCA-
-------TBGCACGCAA
 C G A T A C T G A T C G T G A C C A G T A T C G G T C A A C T G C T G A A C T G A T G C G T C A T A G C C T A G A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

PB0208.1_Zscan4_2/Jaspar

Match Rank:6
Score:0.53
Offset:5
Orientation:forward strand
Alignment:TGGCTGMGAGCACGCA-----
-----CGAAGCACACAAAATA
 C G A T A C T G A T C G T G A C C A G T A T C G G T C A A C T G C T G A A C T G A T G C G T C A T A G C C T A G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TGGCTGMGAGCACGCA
TTGGCA-----------
 A C G T C G A T A C T G A T C G T G A C C A G T A T C G G T C A A C T G C T G A A C T G A T G C G T C A T A G C C T A G A G T C C G T A
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:8
Score:0.52
Offset:5
Orientation:forward strand
Alignment:TGGCTGMGAGCACGCA-----
-----AGCGGCACACACGCAA
 C G A T A C T G A T C G T G A C C A G T A T C G G T C A A C T G C T G A A C T G A T G C G T C A T A G C C T A G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:9
Score:0.52
Offset:10
Orientation:reverse strand
Alignment:TGGCTGMGAGCACGCA
----------CACGCA
 C G A T A C T G A T C G T G A C C A G T A T C G G T C A A C T G C T G A A C T G A T G C G T C A T A G C C T A G A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:10
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:TGGCTGMGAGCACGCA
TGAGTGACAGSC----
 C G A T A C T G A T C G T G A C C A G T A T C G G T C A A C T G C T G A A C T G A T G C G T C A T A G C C T A G A G T C C G T A
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T A C G T A C G T A C G T