Information for 1-AARGARACACAGAGGY (Motif 5)

C T G A T C G A C T G A A T C G G T C A T C G A C G T A A G T C C T G A T A G C C G T A T A C G C G T A A T C G A T C G A G T C
Reverse Opposite:
T C A G A T G C A T G C A C G T A T G C G C A T A T C G A G C T C T A G A C G T A G C T C A G T A T G C A G C T A G C T A G C T
p-value:1e-13
log p-value:-3.159e+01
Information Content per bp:1.673
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.91%
Number of Background Sequences with motif7.8
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets72.7 +/- 23.2bp
Average Position of motif in Background51.2 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:1
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--AARGARACACAGAGGY--
NANTGGAAAAANTGAGTCAN
 A C G T A C G T C T G A T C G A C T G A A T C G G T C A T C G A C G T A A G T C C T G A T A G C C G T A T A C G C G T A A T C G A T C G A G T C A C G T A C G T
T A C G C T G A T C G A C G A T C T A G C T A G T C G A C T G A T C G A T C G A C G T A T C G A G C A T C A T G C G T A T A C G G C A T T G A C C G T A A G C T

PH0152.1_Pou6f1_2/Jaspar

Match Rank:2
Score:0.52
Offset:2
Orientation:forward strand
Alignment:AARGARACACAGAGGY---
--AAACATAATGAGGTTGC
 C T G A T C G A C T G A A T C G G T C A T C G A C G T A A G T C C T G A T A G C C G T A T A C G C G T A A T C G A T C G A G T C A C G T A C G T A C G T
A C G T A C G T T C G A G T C A G C T A T A G C G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G T A C G G C A T C A G T A C T G G T A C

Rarb(var.2)/MA0858.1/Jaspar

Match Rank:3
Score:0.52
Offset:1
Orientation:forward strand
Alignment:AARGARACACAGAGGY--
-AGGTCAACTAAAGGTCA
 C T G A T C G A C T G A A T C G G T C A T C G A C G T A A G T C C T G A T A G C C G T A T A C G C G T A A T C G A T C G A G T C A C G T A C G T
A C G T T C G A A T C G C A T G A G C T A T G C C T G A G T C A T G A C A G C T C G T A C T G A C T G A T A C G A C T G A C G T A G T C C T G A

MF0005.1_Forkhead_class/Jaspar

Match Rank:4
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:AARGARACACAGAGGY
AAATAAACA-------
 C T G A T C G A C T G A A T C G G T C A T C G A C G T A A G T C C T G A T A G C C G T A T A C G C G T A A T C G A T C G A G T C
T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

FOXP1/MA0481.1/Jaspar

Match Rank:5
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---AARGARACACAGAGGY
CAAAAGTAAACAAAG----
 A C G T A C G T A C G T C T G A T C G A C T G A A T C G G T C A T C G A C G T A A G T C C T G A T A G C C G T A T A C G C G T A A T C G A T C G A G T C
G T A C G C T A C G T A T C G A C T G A T C A G G C A T C G T A C G T A C G T A T G A C C G T A T G C A C G T A T C A G A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:6
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:AARGARACACAGAGGY--
------ACAAAGGNBCCT
 C T G A T C G A C T G A A T C G G T C A T C G A C G T A A G T C C T G A T A G C C G T A T A C G C G T A A T C G A T C G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

Sox3/MA0514.1/Jaspar

Match Rank:7
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:AARGARACACAGAGGY
-----AAAACAAAGG-
 C T G A T C G A C T G A A T C G G T C A T C G A C G T A A G T C C T G A T A G C C G T A T A C G C G T A A T C G A T C G A G T C
A C G T A C G T A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T

SOX10/MA0442.1/Jaspar

Match Rank:8
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:AARGARACACAGAGGY
------ACAAAG----
 C T G A T C G A C T G A A T C G G T C A T C G A C G T A A G T C C T G A T A G C C G T A T A C G C G T A A T C G A T C G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:9
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-AARGARACACAGAGGY
WAAGTAAAYA-------
 A C G T C T G A T C G A C T G A A T C G G T C A T C G A C G T A A G T C C T G A T A G C C G T A T A C G C G T A A T C G A T C G A G T C
G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RARA(var.2)/MA0730.1/Jaspar

Match Rank:10
Score:0.50
Offset:1
Orientation:forward strand
Alignment:AARGARACACAGAGGY--
-AGGTCATGCAAAGGTCA
 C T G A T C G A C T G A A T C G G T C A T C G A C G T A A G T C C T G A T A G C C G T A T A C G C G T A A T C G A T C G A G T C A C G T A C G T
A C G T T C G A A C T G A C T G A C G T G A T C T G C A G A C T A T C G A G T C C G T A T C G A T C G A C A T G A C T G A C G T A T G C C T G A