Information for 24-CCAGGACACA (Motif 45)

A G T C A G T C C G T A A C T G C T A G C G T A A G T C C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T C T A G A C G T A G T C A G T C A C G T A C T G A C T G
p-value:1e-5
log p-value:-1.266e+01
Information Content per bp:1.942
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.5 +/- 20.4bp
Average Position of motif in Background20.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCAGGACACA-----
CGAAGCACACAAAATA
 A C G T A G T C A G T C C G T A A C T G C T A G C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PB0130.1_Gm397_2/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCAGGACACA-----
AGCGGCACACACGCAA
 A C G T A G T C A G T C C G T A A C T G C T A G C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CCAGGACACA----
--AGGAAACAGCTG
 A G T C A G T C C G T A A C T G C T A G C G T A A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T T C G A A C T G A C T G C G T A C G T A T C G A A G T C C T G A A T C G G T A C G C A T C A T G

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CCAGGACACA
-AAGGTCAC-
 A G T C A G T C C G T A A C T G C T A G C G T A A G T C C G T A A G T C C G T A
A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CCAGGACACA
CCAGGAACAG-
 A C G T A G T C A G T C C G T A A C T G C T A G C G T A A G T C C G T A A G T C C G T A
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCAGGACACA
CAAGGHCANV
 A G T C A G T C C G T A A C T G C T A G C G T A A G T C C G T A A G T C C G T A
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CCAGGACACA
ANCAGGATGT-
 A C G T A G T C A G T C C G T A A C T G C T A G C G T A A G T C C G T A A G T C C G T A
C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCAGGACACA
TRAGGTCA--
 A G T C A G T C C G T A A C T G C T A G C G T A A G T C C G T A A G T C C G T A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCAGGACACA
BTCAAGGTCA--
 A C G T A C G T A G T C A G T C C G T A A C T G C T A G C G T A A G T C C G T A A G T C C G T A
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCAGGACACA
NTCAAGGTCA--
 A C G T A C G T A G T C A G T C C G T A A C T G C T A G C G T A A G T C C G T A A G T C C G T A
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T