Information for 3-AATGCCAGCA (Motif 4)

G T C A T G C A G C A T A T C G A T G C A T G C C G T A C T A G A T G C G C T A
Reverse Opposite:
C G A T T A C G G A T C G C A T A T C G T A C G T A G C C G T A A C G T C A G T
p-value:1e-14
log p-value:-3.409e+01
Information Content per bp:1.602
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.23%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets50.8 +/- 29.6bp
Average Position of motif in Background41.8 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.72
Offset:1
Orientation:forward strand
Alignment:AATGCCAGCA
-ATGCCAACC
 G T C A T G C A G C A T A T C G A T G C A T G C C G T A C T A G A T G C G C T A
A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

Gfi1b/MA0483.1/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AATGCCAGCA
AAATCACAGCA
 A C G T G T C A T G C A G C A T A T C G A T G C A T G C C G T A C T A G A T G C G C T A
T G C A C G T A C T G A A G C T A G T C G C T A T A G C C G T A C T A G G A T C G C T A

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AATGCCAGCA
AAATCACTGC-
 A C G T G T C A T G C A G C A T A T C G A T G C A T G C C G T A C T A G A T G C G C T A
T G C A C G T A G T C A A G C T A G T C G C T A T A G C C G A T C T A G G A T C A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AATGCCAGCA
CGTGCCAAG-
 G T C A T G C A G C A T A T C G A T G C A T G C C G T A C T A G A T G C G C T A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:AATGCCAGCA
--TGCCAA--
 G T C A T G C A G C A T A T C G A T G C A T G C C G T A C T A G A T G C G C T A
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AATGCCAGCA-
-ATGCCAGACN
 G T C A T G C A G C A T A T C G A T G C A T G C C G T A C T A G A T G C G C T A A C G T
A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AATGCCAGCA----
ACTATGCCAACCTACC
 A C G T A C G T G T C A T G C A G C A T A T C G A T G C A T G C C G T A C T A G A T G C G C T A A C G T A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AATGCCAGCA
-TTGCCAAG-
 G T C A T G C A G C A T A T C G A T G C A T G C C G T A C T A G A T G C G C T A
A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:9
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AATGCCAGCA----
GATATTGACAGCTGCGT
 A C G T A C G T A C G T G T C A T G C A G C A T A T C G A T G C A T G C C G T A C T A G A T G C G C T A A C G T A C G T A C G T A C G T
C A G T C T G A A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C T A G A T G C A C G T T A C G T A G C A C T G C G A T

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.61
Offset:5
Orientation:forward strand
Alignment:AATGCCAGCA
-----CAGCC
 G T C A T G C A G C A T A T C G A T G C A T G C C G T A C T A G A T G C G C T A
A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C