Information for 20-SCATGCATGSGHC (Motif 36)

A T C G A G T C C G T A C G A T A T C G A G T C G T C A A C G T C T A G A T C G A C T G G T C A A T G C
Reverse Opposite:
T A C G C A G T G T A C A T G C A G T C G T C A C A G T A C T G A T G C G C T A A C G T C T A G A T G C
p-value:1e-8
log p-value:-2.032e+01
Information Content per bp:1.709
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets38.2 +/- 23.9bp
Average Position of motif in Background53.3 +/- 19.4bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:SCATGCATGSGHC
CNAGGCCT-----
 A T C G A G T C C G T A C G A T A T C G A G T C G T C A A C G T C T A G A T C G A C T G G T C A A T G C
A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-SCATGCATGSGHC-
GTCATGCHTGRCTGS
 A C G T A T C G A G T C C G T A C G A T A T C G A G T C G T C A A C G T C T A G A T C G A C T G G T C A A T G C A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

Nr2e3/MA0164.1/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:SCATGCATGSGHC
--AAGCTTG----
 A T C G A G T C C G T A C G A T A T C G A G T C G T C A A C G T C T A G A T C G A C T G G T C A A T G C
A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T A C G T A C G T

NRF(NRF)/Promoter/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:SCATGCATGSGHC
GTGCGCATGCGC-
 A T C G A G T C C G T A C G A T A T C G A G T C G T C A A C G T C T A G A T C G A C T G G T C A A T G C
A T C G A G C T A C T G A G T C A C T G A G T C C G T A A C G T A C T G A G T C A C T G A G T C A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:SCATGCATGSGHC
-CACGCA------
 A T C G A G T C C G T A C G A T A T C G A G T C G T C A A C G T C T A G A T C G A C T G G T C A A T G C
A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:SCATGCATGSGHC--
-CAGGCCNNGGCCNN
 A T C G A G T C C G T A C G A T A T C G A G T C G T C A A C G T C T A G A T C G A C T G G T C A A T G C A C G T A C G T
A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:SCATGCATGSGHC-
ACATGCCCGGGCAT
 A T C G A G T C C G T A C G A T A T C G A G T C G T C A A C G T C T A G A T C G A C T G G T C A A T G C A C G T
C T G A T A G C G C T A C G A T A T C G A G T C G A T C G A T C C T A G T C A G T C A G G T A C G C T A C A G T

PB0170.1_Sox17_2/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---SCATGCATGSGHC-
NTTNTATGAATGTGNNC
 A C G T A C G T A C G T A T C G A G T C C G T A C G A T A T C G A G T C G T C A A C G T C T A G A T C G A C T G G T C A A T G C A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----SCATGCATGSGHC
GCAGCCAAGCGTGACN-
 A C G T A C G T A C G T A C G T A T C G A G T C C G T A C G A T A T C G A G T C G T C A A C G T C T A G A T C G A C T G G T C A A T G C
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--SCATGCATGSGHC
TBGCACGCAA-----
 A C G T A C G T A T C G A G T C C G T A C G A T A T C G A G T C G T C A A C G T C T A G A T C G A C T G G T C A A T G C
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T A C G T