Information for 6-GTCGCTATGG (Motif 28)

C A T G A C G T A G T C C T A G G T A C A C G T T G C A A G C T A C T G A C T G
Reverse Opposite:
A G T C A G T C T C G A A C G T T G C A C A T G G A T C C T A G C G T A G T A C
p-value:1e-7
log p-value:-1.650e+01
Information Content per bp:1.735
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif4.27%
Number of Background Sequences with motif495.1
Percentage of Background Sequences with motif1.02%
Average Position of motif in Targets50.7 +/- 29.9bp
Average Position of motif in Background50.1 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0055.1_Rfx4_1/Jaspar

Match Rank:1
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---GTCGCTATGG--
NNCGTTGCTATGGNN
 A C G T A C G T A C G T C A T G A C G T A G T C C T A G G T A C A C G T T G C A A G C T A C T G A C T G A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

PB0054.1_Rfx3_1/Jaspar

Match Rank:2
Score:0.71
Offset:-7
Orientation:reverse strand
Alignment:-------GTCGCTATGG------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G A C G T A G T C C T A G G T A C A C G T T G C A A G C T A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

Rfx1/MA0509.1/Jaspar

Match Rank:3
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GTCGCTATGG----
GTTGCCATGGNAAC
 C A T G A C G T A G T C C T A G G T A C A C G T T G C A A G C T A C T G A C T G A C G T A C G T A C G T A C G T
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GTCGCTATGG
CTGTTGCTAGGS
 A C G T A C G T C A T G A C G T A G T C C T A G G T A C A C G T T G C A A G C T A C T G A C T G
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:5
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---GTCGCTATGG--
NCCGTTGCTANGNGN
 A C G T A C G T A C G T C A T G A C G T A G T C C T A G G T A C A C G T T G C A A G C T A C T G A C T G A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GTCGCTATGG---
NGTTGCCATGGCAA
 A C G T C A T G A C G T A G T C C T A G G T A C A C G T T G C A A G C T A C T G A C T G A C G T A C G T A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:7
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GTCGCTATGG----
KGTTGCCATGGCAAC
 A C G T C A T G A C G T A G T C C T A G G T A C A C G T T G C A A G C T A C T G A C T G A C G T A C G T A C G T A C G T
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GTCGCTATGG---
GGTTGCCATGGCAA
 A C G T C A T G A C G T A G T C C T A G G T A C A C G T T G C A A G C T A C T G A C T G A C G T A C G T A C G T
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

RFX3/MA0798.1/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GTCGCTATGG-----
CGTTGCCATGGCAACN
 A C G T C A T G A C G T A G T C C T A G G T A C A C G T T G C A A G C T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX4/MA0799.1/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GTCGCTATGG-----
CGTTGCCATGGCAACG
 A C G T C A T G A C G T A G T C C T A G G T A C A C G T T G C A A G C T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A T G C C T A G G C A T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G