Information for 7-GAGGTTTATT (Motif 9)

C T A G C G T A A C T G C T A G G C A T A C G T A C G T G T C A C G A T A C G T
Reverse Opposite:
G T C A C G T A A C G T G T C A G T C A C G T A G A T C A G T C G C A T G A T C
p-value:1e-10
log p-value:-2.303e+01
Information Content per bp:1.806
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.86%
Number of Background Sequences with motif233.4
Percentage of Background Sequences with motif0.52%
Average Position of motif in Targets45.8 +/- 22.8bp
Average Position of motif in Background52.2 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GAGGTTTATT---
NTGATTTATGGCC
 C T A G C G T A A C T G C T A G G C A T A C G T A C G T G T C A C G A T A C G T A C G T A C G T A C G T
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GAGGTTTATT
NGGGATTA--
 C T A G C G T A A C T G C T A G G C A T A C G T A C G T G T C A C G A T A C G T
T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:3
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:GAGGTTTATT--
---TTTTATTGC
 C T A G C G T A A C T G C T A G G C A T A C G T A C G T G T C A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:4
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GAGGTTTATT---
-TGATTTATGGCC
 C T A G C G T A A C T G C T A G G C A T A C G T A C G T G T C A C G A T A C G T A C G T A C G T A C G T
A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

HOXA13/MA0650.1/Jaspar

Match Rank:5
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:GAGGTTTATT--
--TTTTTATTGG
 C T A G C G T A A C T G C T A G G C A T A C G T A C G T G T C A C G A T A C G T A C G T A C G T
A C G T A C G T C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G

PH0013.1_Cdx2/Jaspar

Match Rank:6
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GAGGTTTATT------
NAATTTTATTACCNNN
 C T A G C G T A A C T G C T A G G C A T A C G T A C G T G T C A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

HOXB13/MA0901.1/Jaspar

Match Rank:7
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:GAGGTTTATT--
--NTTTTATTGG
 C T A G C G T A A C T G C T A G G C A T A C G T A C G T G T C A C G A T A C G T A C G T A C G T
A C G T A C G T C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G

PH0078.1_Hoxd13/Jaspar

Match Rank:8
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GAGGTTTATT-----
NNANTTTTATTGGNNN
 A C G T C T A G C G T A A C T G C T A G G C A T A C G T A C G T G T C A C G A T A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:9
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GAGGTTTATT--
--NTTTTATGAC
 C T A G C G T A A C T G C T A G G C A T A C G T A C G T G T C A C G A T A C G T A C G T A C G T
A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GAGGTTTATT---
-DGWTTTATGRCN
 C T A G C G T A A C T G C T A G G C A T A C G T A C G T G T C A C G A T A C G T A C G T A C G T A C G T
A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C