Information for 3-CAKATGRMAGCCTGTC (Motif 3)

G T A C C G T A A C G T G C T A C G A T C T A G C T G A G T A C C T G A A C T G T A G C G A T C A C G T A C T G A G C T G A T C
Reverse Opposite:
C A T G C T G A A G T C C G T A C A T G A T C G A G T C A G C T A C T G A G C T A G T C C G T A C A G T G T C A A C G T A C T G
p-value:1e-9
log p-value:-2.167e+01
Information Content per bp:1.713
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif4.08%
Number of Background Sequences with motif5.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.0 +/- 26.1bp
Average Position of motif in Background67.0 +/- 20.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CAKATGRMAGCCTGTC-
---CTGGCAGNCTGCCA
 G T A C C G T A A C G T G C T A C G A T C T A G C T G A G T A C C T G A A C T G T A G C G A T C A C G T A C T G A G C T G A T C A C G T
A C G T A C G T A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

Bhlha15/MA0607.1/Jaspar

Match Rank:2
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CAKATGRMAGCCTGTC
ACATATGG---------
 A C G T G T A C C G T A A C G T G C T A C G A T C T A G C T G A G T A C C T G A A C T G T A G C G A T C A C G T A C T G A G C T G A T C
T C G A A G T C C G T A A C G T G T C A A C G T A C T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:3
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CAKATGRMAGCCTGTC
AACAKATGGY--------
 A C G T A C G T G T A C C G T A A C G T G C T A C G A T C T A G C T G A G T A C C T G A A C T G T A G C G A T C A C G T A C T G A G C T G A T C
C T G A T G C A A G T C T C G A A C T G T G C A G C A T A C T G A C T G G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:4
Score:0.53
Offset:3
Orientation:forward strand
Alignment:CAKATGRMAGCCTGTC
---TTGACAGC-----
 G T A C C G T A A C G T G C T A C G A T C T A G C T G A G T A C C T G A A C T G T A G C G A T C A C G T A C T G A G C T G A T C
A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CAKATGRMAGCCTGTC
-AGGTGNCAGACAG--
 G T A C C G T A A C G T G C T A C G A T C T A G C T G A G T A C C T G A A C T G T A G C G A T C A C G T A C T G A G C T G A T C
A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--CAKATGRMAGCCTGTC
AACAGATGGC--------
 A C G T A C G T G T A C C G T A A C G T G C T A C G A T C T A G C T G A G T A C C T G A A C T G T A G C G A T C A C G T A C T G A G C T G A T C
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:7
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CAKATGRMAGCCTGTC
CAAGATGGCGGC-----
 A C G T G T A C C G T A A C G T G C T A C G A T C T A G C T G A G T A C C T G A A C T G T A G C G A T C A C G T A C T G A G C T G A T C
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C A C G T A C G T A C G T A C G T A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:8
Score:0.51
Offset:7
Orientation:reverse strand
Alignment:CAKATGRMAGCCTGTC
-------AAGCTTG--
 G T A C C G T A A C G T G C T A C G A T C T A G C T G A G T A C C T G A A C T G T A G C G A T C A C G T A C T G A G C T G A T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T

Twist2/MA0633.1/Jaspar

Match Rank:9
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--CAKATGRMAGCCTGTC
NACATATGGN--------
 A C G T A C G T G T A C C G T A A C G T G C T A C G A T C T A G C T G A G T A C C T G A A C T G T A G C G A T C A C G T A C T G A G C T G A T C
G T C A G T C A A G T C C G T A A G C T C T G A A C G T A C T G A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:10
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----CAKATGRMAGCCTGTC
VNAVCAGCTGGC--------
 A C G T A C G T A C G T A C G T G T A C C G T A A C G T G C T A C G A T C T A G C T G A G T A C C T G A A C T G T A G C G A T C A C G T A C T G A G C T G A T C
T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T