Information for 5-CTTGAAAAWAATW (Motif 11)

G A T C G A C T C G A T A C T G G T C A C G T A C G T A C G T A G C A T C G T A G T C A G C A T C G A T
Reverse Opposite:
C G T A C G T A C A G T G A C T C G T A A C G T C G A T C G A T A C G T T G A C G C T A C G T A C T A G
p-value:1e-6
log p-value:-1.520e+01
Information Content per bp:1.623
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif7.14%
Number of Background Sequences with motif209.1
Percentage of Background Sequences with motif0.43%
Average Position of motif in Targets42.9 +/- 20.8bp
Average Position of motif in Background49.0 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0062.1_Sox12_1/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CTTGAAAAWAATW-
NTTNAGAACAATTA
 G A T C G A C T C G A T A C T G G T C A C G T A C G T A C G T A G C A T C G T A G T C A G C A T C G A T A C G T
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A

PB0067.1_Sox18_1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CTTGAAAAWAATW---
NNTNANAACAATTNNA
 G A T C G A C T C G A T A C T G G T C A C G T A C G T A C G T A G C A T C G T A G T C A G C A T C G A T A C G T A C G T A C G T
C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A

MF0010.1_Homeobox_class/Jaspar

Match Rank:3
Score:0.65
Offset:6
Orientation:forward strand
Alignment:CTTGAAAAWAATW
------AATAATT
 G A T C G A C T C G A T A C T G G T C A C G T A C G T A C G T A G C A T C G T A G T C A G C A T C G A T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T

PB0074.1_Sox8_1/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CTTGAAAAWAATW-----
-TNNAGAACAATANATNN
 G A T C G A C T C G A T A C T G G T C A C G T A C G T A C G T A G C A T C G T A G T C A G C A T C G A T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C

PB0065.1_Sox15_1/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CTTGAAAAWAATW-----
-TAGTGAACAATAGATTT
 G A T C G A C T C G A T A C T G G T C A C G T A C G T A C G T A G C A T C G T A G T C A G C A T C G A T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T

PB0072.1_Sox5_1/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CTTGAAAAWAATW----
-TTTAGAACAATAAAAT
 G A T C G A C T C G A T A C T G G T C A C G T A C G T A C G T A G C A T C G T A G T C A G C A T C G A T A C G T A C G T A C G T A C G T
A C G T C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T

PB0165.1_Sox11_2/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CTTGAAAAWAATW--
-NNCNNAACAATTNT
 G A T C G A C T C G A T A C T G G T C A C G T A C G T A C G T A G C A T C G T A G T C A G C A T C G A T A C G T A C G T
A C G T G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T

Sox5/MA0087.1/Jaspar

Match Rank:8
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:CTTGAAAAWAATW
-----NAACAAT-
 G A T C G A C T C G A T A C T G G T C A C G T A C G T A C G T A G C A T C G T A G T C A G C A T C G A T
A C G T A C G T A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T

PB0063.1_Sox13_1/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CTTGAAAAWAATW----
-TTAAGAACAATAAATT
 G A T C G A C T C G A T A C T G G T C A C G T A C G T A C G T A G C A T C G T A G T C A G C A T C G A T A C G T A C G T A C G T A C G T
A C G T C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CTTGAAAAWAATW
TACTGGAAAAAAAA-
 A C G T A C G T G A T C G A C T C G A T A C T G G T C A C G T A C G T A C G T A G C A T C G T A G T C A G C A T C G A T
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T