Information for 5-TTTGTTGACTGAT (Motif 9)

A C G T A C G T A C G T T A C G A C G T A C G T C T A G C T G A A G T C A C G T A C T G C G T A A C G T
Reverse Opposite:
C G T A A C G T A G T C C G T A A C T G A G C T A G T C C G T A C G T A A G T C C G T A C G T A C G T A
p-value:1e-10
log p-value:-2.487e+01
Information Content per bp:1.914
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets67.2 +/- 12.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0015.1_Foxa2_1/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---TTTGTTGACTGAT-
NNNTTTGTTTACTTTTN
 A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C G T A C G T C T A G C T G A A G T C A C G T A C T G C G T A A C G T A C G T
T A C G G A C T A T G C C G A T C G A T C G A T C T A G C G A T C A G T C A G T C T G A A G T C G C A T G C A T C G A T C G A T C G A T

PBX1/MA0070.1/Jaspar

Match Rank:2
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:TTTGTTGACTGAT--
---TTTGATTGATGN
 A C G T A C G T A C G T T A C G A C G T A C G T C T A G C T G A A G T C A C G T A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

PB0016.1_Foxj1_1/Jaspar

Match Rank:3
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TTTGTTGACTGAT
NNNNTTTGTTTACNNT-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C G T A C G T C T A G C T G A A G T C A C G T A C T G C G T A A C G T
G T C A G T C A G C A T C A G T G C A T C A G T C G A T C T A G C G A T C G A T C A G T C T G A A G T C C G A T G C A T C G A T A C G T

FOXC2/MA0846.1/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TTTGTTGACTGAT
TTTGTTTACTTA-
 A C G T A C G T A C G T T A C G A C G T A C G T C T A G C T G A A G T C A C G T A C T G C G T A A C G T
C G A T C G A T G A C T T C A G G A C T C A G T C A G T C T G A A G T C C G A T G A C T C G T A A C G T

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TTTGTTGACTGAT
CNTGTTTACATA-
 A C G T A C G T A C G T T A C G A C G T A C G T C T A G C T G A A G T C A C G T A C T G C G T A A C G T
A T G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A A C G T

FOXP1/MA0481.1/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TTTGTTGACTGAT-
CTTTGTTTACTTTTN
 A C G T A C G T A C G T A C G T T A C G A C G T A C G T C T A G C T G A A G T C A C G T A C T G C G T A A C G T A C G T
A G T C G C A T A C G T A C G T A C T G A C G T A C G T A C G T C G T A A G T C G A C T A G C T G C A T C G A T C A T G

Foxj3/MA0851.1/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TTTGTTGACTGAT-
NNNTTTGTTTACNTTNN
 A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C G T A C G T C T A G C T G A A G T C A C G T A C T G C G T A A C G T A C G T
C A T G A C G T A T C G C G A T C G A T C G A T C T A G C G A T C G A T A C G T C T G A A G T C G A C T G C A T C A G T G A C T C A G T

PB0017.1_Foxj3_1/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TTTGTTGACTGAT-
NNNTTTGTTTACNTTNN
 A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C G T A C G T C T A G C T G A A G T C A C G T A C T G C G T A A C G T A C G T
C A T G A C G T A T C G C G A T C G A T C G A T C T A G C G A T C G A T A C G T C T G A A G T C G A C T G C A T C A G T G A C T C A G T

PB0144.1_Lef1_2/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TTTGTTGACTGAT----
-NNANTGATTGATNTTN
 A C G T A C G T A C G T T A C G A C G T A C G T C T A G C T G A A G T C A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G C A T C G T A T C G A C A T G G A C T C T A G G T C A G A C T C G A T T A C G C G T A C G A T A T G C A G C T G C A T A T G C

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:10
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TTTGTTGACTGAT
--TRTTTACTTW-
 A C G T A C G T A C G T T A C G A C G T A C G T C T A G C T G A A G T C A C G T A C T G C G T A A C G T
A C G T A C G T A C G T C T A G A G C T A C G T A C G T C T G A A G T C G A C T A G C T C G T A A C G T