Information for 12-GCGCCAGAGA (Motif 16)

A C T G A G T C A C T G A G T C A G T C C G T A A C T G C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C C G A T A G T C A C G T A C T G A C T G A G T C A C T G A G T C
p-value:1e-8
log p-value:-2.066e+01
Information Content per bp:1.955
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif10.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets50.9 +/- 23.7bp
Average Position of motif in Background42.9 +/- 37.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

E2F1/MA0024.3/Jaspar

Match Rank:1
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GCGCCAGAGA
TTTGGCGCCAAA--
 A C G T A C G T A C G T A C G T A C T G A G T C A C T G A G T C A G T C C G T A A C T G C G T A A C T G C G T A
G C A T C G A T C G A T T A C G A T C G A G T C A T C G T A G C A G T C G T C A G C T A C G T A A C G T A C G T

PB0112.1_E2F2_2/Jaspar

Match Rank:2
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------GCGCCAGAGA-
CCTTCGGCGCCAAAAGG
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C T G A G T C A G T C C G T A A C T G C G T A A C T G C G T A A C G T
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

PB0113.1_E2F3_2/Jaspar

Match Rank:3
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------GCGCCAGAGA-
AGCTCGGCGCCAAAAGC
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C T G A G T C A G T C C G T A A C T G C G T A A C T G C G T A A C G T
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C

PB0195.1_Zbtb3_2/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GCGCCAGAGA---
NNNNTGCCAGTGATTG
 A C G T A C G T A C G T A C T G A G T C A C T G A G T C A G T C C G T A A C T G C G T A A C T G C G T A A C G T A C G T A C G T
G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G

POL006.1_BREu/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GCGCCAGAGA
AGCGCGCC-----
 A C G T A C G T A C G T A C T G A G T C A C T G A G T C A G T C C G T A A C T G C G T A A C T G C G T A
T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCGCCAGAGA
CGTGCCAAG--
 A C G T A C T G A G T C A C T G A G T C A G T C C G T A A C T G C G T A A C T G C G T A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GCGCCAGAGA
-TGCCAA---
 A C T G A G T C A C T G A G T C A G T C C G T A A C T G C G T A A C T G C G T A
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCGCCAGAGA
AGGTGHCAGACA
 A C G T A C G T A C T G A G T C A C T G A G T C A G T C C G T A A C T G C G T A A C T G C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

PB0140.1_Irf6_2/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCGCCAGAGA-----
NNNACCGAGAGTNNN
 A C T G A G T C A C T G A G T C A G T C C G T A A C T G C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GCGCCAGAGA-
AGGTGNCAGACAG
 A C G T A C G T A C T G A G T C A C T G A G T C A G T C C G T A A C T G C G T A A C T G C G T A A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G