Information for 2-CTTTGTTTTC (Motif 9)

A T G C A C G T A C G T C G A T A C T G A G C T A C G T A C G T A C G T T A G C
Reverse Opposite:
A T C G G T C A C G T A C G T A C T G A T G A C C G T A C G T A C G T A T A C G
p-value:1e-6
log p-value:-1.564e+01
Information Content per bp:1.842
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif6.30%
Number of Background Sequences with motif609.0
Percentage of Background Sequences with motif1.24%
Average Position of motif in Targets40.6 +/- 28.4bp
Average Position of motif in Background51.2 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)2.2
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-CTTTGTTTTC
CCTTTGTTTT-
 A C G T A T G C A C G T A C G T C G A T A C T G A G C T A C G T A C G T A C G T T A G C
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T

FOXP1/MA0481.1/Jaspar

Match Rank:2
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:CTTTGTTTTC-----
CTTTGTTTACTTTTN
 A T G C A C G T A C G T C G A T A C T G A G C T A C G T A C G T A C G T T A G C A C G T A C G T A C G T A C G T A C G T
A G T C G C A T A C G T A C G T A C T G A C G T A C G T A C G T C G T A A G T C G A C T A G C T G C A T C G A T C A T G

PB0071.1_Sox4_1/Jaspar

Match Rank:3
Score:0.80
Offset:-5
Orientation:reverse strand
Alignment:-----CTTTGTTTTC--
TNNTCCTTTGTTCTNNT
 A C G T A C G T A C G T A C G T A C G T A T G C A C G T A C G T C G A T A C T G A G C T A C G T A C G T A C G T T A G C A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

PB0061.1_Sox11_1/Jaspar

Match Rank:4
Score:0.79
Offset:-5
Orientation:reverse strand
Alignment:-----CTTTGTTTTC--
NNNTCCTTTGTTCTNNN
 A C G T A C G T A C G T A C G T A C G T A T G C A C G T A C G T C G A T A C T G A G C T A C G T A C G T A C G T T A G C A C G T A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

Sox6/MA0515.1/Jaspar

Match Rank:5
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-CTTTGTTTTC
CCATTGTTTT-
 A C G T A T G C A C G T A C G T C G A T A C T G A G C T A C G T A C G T A C G T T A G C
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:6
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CTTTGTTTTC
YCTTTGTTCC-
 A C G T A T G C A C G T A C G T C G A T A C T G A G C T A C G T A C G T A C G T T A G C
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T

PB0016.1_Foxj1_1/Jaspar

Match Rank:7
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---CTTTGTTTTC---
NNNNTTTGTTTACNNT
 A C G T A C G T A C G T A T G C A C G T A C G T C G A T A C T G A G C T A C G T A C G T A C G T T A G C A C G T A C G T A C G T
G T C A G T C A G C A T C A G T G C A T C A G T C G A T C T A G C G A T C G A T C A G T C T G A A G T C C G A T G C A T C G A T

Foxj3/MA0851.1/Jaspar

Match Rank:8
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--CTTTGTTTTC-----
NNNTTTGTTTACNTTNN
 A C G T A C G T A T G C A C G T A C G T C G A T A C T G A G C T A C G T A C G T A C G T T A G C A C G T A C G T A C G T A C G T A C G T
C A T G A C G T A T C G C G A T C G A T C G A T C T A G C G A T C G A T A C G T C T G A A G T C G A C T G C A T C A G T G A C T C A G T

PB0017.1_Foxj3_1/Jaspar

Match Rank:9
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--CTTTGTTTTC-----
NNNTTTGTTTACNTTNN
 A C G T A C G T A T G C A C G T A C G T C G A T A C T G A G C T A C G T A C G T A C G T T A G C A C G T A C G T A C G T A C G T A C G T
C A T G A C G T A T C G C G A T C G A T C G A T C T A G C G A T C G A T A C G T C T G A A G T C G A C T G C A T C A G T G A C T C A G T

Foxk1/MA0852.1/Jaspar

Match Rank:10
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--CTTTGTTTTC-----
NNNTTTGTTTACATTTN
 A C G T A C G T A T G C A C G T A C G T C G A T A C T G A G C T A C G T A C G T A C G T T A G C A C G T A C G T A C G T A C G T A C G T
T A G C A G C T A T C G G C A T C G A T A C G T C T A G A C G T C G A T A C G T C G T A A G T C G T C A G C A T G C A T G A C T G C A T