Information for 1-TTGTAGGTCACAY (Motif 4)

C A G T A C G T A T C G G A C T C G T A A C T G A C T G C G A T T A G C C G T A A T G C C G T A G A T C
Reverse Opposite:
C T A G A C G T A T C G A C G T A C T G C G T A G T A C G T A C C G A T C T G A A T G C C G T A G T C A
p-value:1e-8
log p-value:-1.929e+01
Information Content per bp:1.748
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif3.15%
Number of Background Sequences with motif69.5
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets51.6 +/- 26.1bp
Average Position of motif in Background57.7 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA/MA0071.1/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TTGTAGGTCACAY
ATCAAGGTCA---
 C A G T A C G T A T C G G A C T C G T A A C T G A C T G C G A T T A G C C G T A A T G C C G T A G A T C
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:2
Score:0.64
Offset:3
Orientation:forward strand
Alignment:TTGTAGGTCACAY
---AAGGTCAC--
 C A G T A C G T A T C G G A C T C G T A A C T G A C T G C G A T T A G C C G T A A T G C C G T A G A T C
A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.63
Offset:4
Orientation:forward strand
Alignment:TTGTAGGTCACAY
----AGGTCA---
 C A G T A C G T A T C G G A C T C G T A A C T G A C T G C G A T T A G C C G T A A T G C C G T A G A T C
A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TTGTAGGTCACAY
-TCAAGGTCAN--
 C A G T A C G T A T C G G A C T C G T A A C T G A C T G C G A T T A G C C G T A A T G C C G T A G A T C
A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TTGTAGGTCACAY
-TCAAGGTCAT--
 C A G T A C G T A T C G G A C T C G T A A C T G A C T G C G A T T A G C C G T A A T G C C G T A G A T C
A C G T G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T A C G T A C G T

ESRRB/MA0141.3/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TTGTAGGTCACAY
-TCAAGGTCATA-
 C A G T A C G T A T C G G A C T C G T A A C T G A C T G C G A T T A G C C G T A A T G C C G T A G A T C
A C G T G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A A C G T

Esrra/MA0592.2/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TTGTAGGTCACAY
TTCAAGGTCAT--
 C A G T A C G T A T C G G A C T C G T A A C T G A C T G C G A T T A G C C G T A A T G C C G T A G A T C
A C G T G A C T T A G C C T G A C T G A A C T G A C T G A C G T A T G C T C G A G C A T A C G T A C G T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:8
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:TTGTAGGTCACAY--
-----KTTCACACCT
 C A G T A C G T A T C G G A C T C G T A A C T G A C T G C G A T T A G C C G T A A T G C C G T A G A T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T C A G T A C G T T A G C G C T A A G T C C T G A G T A C G A T C G C A T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TTGTAGGTCACAY
TATAAGTAGGTCAA--
 A C G T A C G T A C G T C A G T A C G T A T C G G A C T C G T A A C T G A C T G C G A T T A G C C G T A A T G C C G T A G A T C
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TTGTAGGTCACAY
AAYTAGGTCA---
 C A G T A C G T A T C G G A C T C G T A A C T G A C T G C G A T T A G C C G T A A T G C C G T A G A T C
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T