Information for 1-TTATGAACAT (Motif 2)

A G C T C A G T C G T A A C G T T A C G C G T A C G T A T G A C C G T A A C G T
Reverse Opposite:
G T C A A C G T A C T G A C G T A C G T A T G C G T C A A C G T G T C A C T G A
p-value:1e-9
log p-value:-2.181e+01
Information Content per bp:1.843
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif5.91%
Number of Background Sequences with motif331.9
Percentage of Background Sequences with motif0.67%
Average Position of motif in Targets46.4 +/- 24.8bp
Average Position of motif in Background52.1 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU3F1/MA0786.1/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:TTATGAACAT--
TTATGCAAATTA
 A G C T C A G T C G T A A C G T T A C G C G T A C G T A T G A C C G T A A C G T A C G T A C G T
C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TTATGAACAT
TTATGCAAAT
 A G C T C A G T C G T A A C G T T A C G C G T A C G T A T G A C C G T A A C G T
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.68
Offset:2
Orientation:forward strand
Alignment:TTATGAACAT--
--ATGAATATTC
 A G C T C A G T C G T A A C G T T A C G C G T A C G T A T G A C C G T A A C G T A C G T A C G T
A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

POU2F1/MA0785.1/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TTATGAACAT-
AATATGCAAATT
 A C G T A G C T C A G T C G T A A C G T T A C G C G T A C G T A T G A C C G T A A C G T A C G T
G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T

POU5F1B/MA0792.1/Jaspar

Match Rank:5
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TTATGAACAT
-TATGCAAAT
 A G C T C A G T C G T A A C G T T A C G C G T A C G T A T G A C C G T A A C G T
A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.67
Offset:2
Orientation:forward strand
Alignment:TTATGAACAT--
--ATGMATATDC
 A G C T C A G T C G T A A C G T T A C G C G T A C G T A T G A C C G T A A C G T A C G T A C G T
A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

POU3F4/MA0789.1/Jaspar

Match Rank:7
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TTATGAACAT
-TATGCAAAT
 A G C T C A G T C G T A A C G T T A C G C G T A C G T A T G A C C G T A A C G T
A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T

POU2F2/MA0507.1/Jaspar

Match Rank:8
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TTATGAACAT---
ATATGCAAATNNN
 A G C T C A G T C G T A A C G T T A C G C G T A C G T A T G A C C G T A A C G T A C G T A C G T A C G T
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

POU3F2/MA0787.1/Jaspar

Match Rank:9
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TTATGAACAT--
TTATGCAAATTA
 A G C T C A G T C G T A A C G T T A C G C G T A C G T A T G A C C G T A A C G T A C G T A C G T
C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:10
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TTATGAACAT-
WWTRTAAACAVG
 A C G T A G C T C A G T C G T A A C G T T A C G C G T A C G T A T G A C C G T A A C G T A C G T
C G T A G C T A C G A T C T A G A C G T G T C A C G T A C G T A A G T C C G T A T G C A T A C G