Information for 2-CATKTACTTGAKG (Motif 4)

A G T C C G T A A C G T A C G T A C G T C G T A A G T C A G C T A C G T A C T G C G T A A C G T A C T G
Reverse Opposite:
T A G C G T C A A C G T A G T C C G T A C T G A A C T G C G A T C G T A G T C A C G T A A C G T A C T G
p-value:1e-10
log p-value:-2.332e+01
Information Content per bp:1.917
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.72%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets60.8 +/- 25.2bp
Average Position of motif in Background33.3 +/- 22.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0112.1_Nkx2-3/Jaspar

Match Rank:1
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CATKTACTTGAKG
CNTTAAGTACTTAANG
 A C G T A C G T A C G T A G T C C G T A A C G T A C G T A C G T C G T A A G T C A G C T A C G T A C T G C G T A A C G T A C T G
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G

NKX2-8/MA0673.1/Jaspar

Match Rank:2
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CATKTACTTGAKG
---CCACTTGAA-
 A G T C C G T A A C G T A C G T A C G T C G T A A G T C A G C T A C G T A C T G C G T A A C G T A C T G
A C G T A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T

PH0087.1_Irx6/Jaspar

Match Rank:3
Score:0.57
Offset:-7
Orientation:reverse strand
Alignment:-------CATKTACTTGAKG
ANTTNTACATGTANTTN---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T A C G T C G T A A G T C A G C T A C G T A C T G C G T A A C G T A C T G
G C T A C G A T C G A T G C A T A C G T C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G A C T C G A T C G A T C G A T A C G T A C G T A C G T

PH0084.1_Irx3_2/Jaspar

Match Rank:4
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------CATKTACTTGAKG
AATATACATGTAATATA--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T A C G T C G T A A G T C A G C T A C G T A C T G C G T A A C G T A C T G
C G T A C G T A C G A T C G T A C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A T C G A C G A T C G T A G A C T C G A T A C G T A C G T

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:5
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CATKTACTTGAKG-
TTCNAAGTACTTNNNNN
 A C G T A C G T A C G T A G T C C G T A A C G T A C G T A C G T C G T A A G T C A G C T A C G T A C T G C G T A A C G T A C T G A C G T
C A G T A C G T A G T C T G A C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A T C G T A C G G C T A C A T G A G C T

Esrra/MA0592.2/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CATKTACTTGAKG
-ATGACCTTGAA-
 A G T C C G T A A C G T A C G T A C G T C G T A A G T C A G C T A C G T A C T G C G T A A C G T A C T G
A C G T C G T A A G C T T A C G T G C A T G A C T G A C A G C T A G C T A T C G C T G A T G C A A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CATKTACTTGAKG
BNTGDCCTTG---
 A G T C C G T A A C G T A C G T A C G T C G T A A G T C A G C T A C G T A C T G C G T A A C G T A C T G
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CATKTACTTGAKG-
--TTTGATTGATGN
 A G T C C G T A A C G T A C G T A C G T C G T A A G T C A G C T A C G T A C T G C G T A A C G T A C T G A C G T
A C G T A C G T C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

PH0082.1_Irx2/Jaspar

Match Rank:9
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------CATKTACTTGAKG
TAAATACATGTAAAATT--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T A C G T C G T A A G T C A G C T A C G T A C T G C G T A A C G T A C T G
C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T A C G T A C G T

PH0083.1_Irx3_1/Jaspar

Match Rank:10
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------CATKTACTTGAKG
AAAATACATGTAATACT--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T A C G T C G T A A G T C A G C T A C G T A C T G C G T A A C G T A C T G
C G T A C T G A C G A T C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A T G C A C G A T C G T A G A T C C G A T A C G T A C G T