Information for 3-TCTGACWTTAATC (Motif 2)

C G A T A G T C C G A T A C T G C G T A T A G C G C T A A C G T A C G T G T C A T C G A G A C T G A T C
Reverse Opposite:
C T A G C T G A A C G T A C G T G T C A C G T A C G A T A T C G G C A T T G A C C G T A A C T G G C T A
p-value:1e-15
log p-value:-3.595e+01
Information Content per bp:1.708
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.85%
Number of Background Sequences with motif69.7
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets51.9 +/- 25.0bp
Average Position of motif in Background48.4 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3b/MA0601.1/Jaspar

Match Rank:1
Score:0.62
Offset:4
Orientation:forward strand
Alignment:TCTGACWTTAATC--
----ATATTAATTAA
 C G A T A G T C C G A T A C T G C G T A T A G C G C T A A C G T A C G T G T C A T C G A G A C T G A T C A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

Arid3a/MA0151.1/Jaspar

Match Rank:2
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:TCTGACWTTAATC
------TTTAAT-
 C G A T A G T C C G A T A C T G C G T A T A G C G C T A A C G T A C G T G T C A T C G A G A C T G A T C
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:3
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TCTGACWTTAATC-
--RGCCATYAATCA
 C G A T A G T C C G A T A C T G C G T A T A G C G C T A A C G T A C G T G T C A T C G A G A C T G A T C A C G T
A C G T A C G T C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A

PH0073.1_Hoxc9/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TCTGACWTTAATC--
GGAGGTCATTAATTAT
 A C G T C G A T A G T C C G A T A C T G C G T A T A G C G C T A A C G T A C G T G T C A T C G A G A C T G A T C A C G T A C G T
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

OTX2/MA0712.1/Jaspar

Match Rank:5
Score:0.60
Offset:7
Orientation:forward strand
Alignment:TCTGACWTTAATC--
-------TTAATCCT
 C G A T A G T C C G A T A C T G C G T A T A G C G C T A A C G T A C G T G T C A T C G A G A C T G A T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:6
Score:0.60
Offset:4
Orientation:forward strand
Alignment:TCTGACWTTAATC-
----TCATCAATCA
 C G A T A G T C C G A T A C T G C G T A T A G C G C T A A C G T A C G T G T C A T C G A G A C T G A T C A C G T
A C G T A C G T A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

PH0035.1_Gsc/Jaspar

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:TCTGACWTTAATC------
--AATCGTTAATCCCTTTA
 C G A T A G T C C G A T A C T G C G T A T A G C G C T A A C G T A C G T G T C A T C G A G A C T G A T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A T C G A G C A T G T A C T C A G G A C T C G A T C T G A C G T A A C G T G A T C A G T C A T G C A G C T C A G T G C A T T G A C

OTX1/MA0711.1/Jaspar

Match Rank:8
Score:0.59
Offset:7
Orientation:forward strand
Alignment:TCTGACWTTAATC--
-------TTAATCCG
 C G A T A G T C C G A T A C T G C G T A T A G C G C T A A C G T A C G T G T C A T C G A G A C T G A T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G

Pitx1/MA0682.1/Jaspar

Match Rank:9
Score:0.59
Offset:7
Orientation:forward strand
Alignment:TCTGACWTTAATC--
-------TTAATCCC
 C G A T A G T C C G A T A C T G C G T A T A G C G C T A A C G T A C G T G T C A T C G A G A C T G A T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:10
Score:0.58
Offset:7
Orientation:reverse strand
Alignment:TCTGACWTTAATC--
-------YTAATCCY
 C G A T A G T C C G A T A C T G C G T A T A G C G C T A A C G T A C G T G T C A T C G A G A C T G A T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C