Information for 12-TCAGGAACAGGGC (Motif 20)

A C G T A G T C C G T A A C T G A C T G C G T A G T C A A G T C C G T A A C T G A C T G A C T G A T G C
Reverse Opposite:
A T C G A G T C A G T C A G T C A C G T A C T G A C G T A C G T A G T C A G T C A C G T A C T G C G T A
p-value:1e-2
log p-value:-6.213e+00
Information Content per bp:1.940
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets77.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TCAGGAACAGGGC
CCAGGAACAG---
 A C G T A G T C C G T A A C T G A C T G C G T A G T C A A G T C C G T A A C T G A C T G A C T G A T G C
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T

PB0200.1_Zfp187_2/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TCAGGAACAGGGC--
NNAGGGACAAGGGCNC
 A C G T A C G T A G T C C G T A A C T G A C T G C G T A G T C A A G T C C G T A A C T G A C T G A C T G A T G C A C G T A C G T
A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C

REST/MA0138.2/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TCAGGAACAGGGC-------
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A G T C C G T A A C T G A C T G C G T A G T C A A G T C C G T A A C T G A C T G A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TCAGGAACAGGGC-------
TCAGCACCATGGACAGCTCC
 A C G T A G T C C G T A A C T G A C T G C G T A G T C A A G T C C G T A A C T G A C T G A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TCAGGAACAGGGC
--TGGAACAGMA-
 A C G T A G T C C G T A A C T G A C T G C G T A G T C A A G T C C G T A A C T G A C T G A C T G A T G C
A C G T A C G T C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---TCAGGAACAGGGC--
RGGTCADNNAGAGGTCAV
 A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C T G C G T A G T C A A G T C C G T A A C T G A C T G A C T G A T G C A C G T A C G T
C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C

RARA::RXRA/MA0159.1/Jaspar

Match Rank:7
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TCAGGAACAGGGC-
AGGTCACGGAGAGGTCA
 A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C T G C G T A G T C A A G T C C G T A A C T G A C T G A C T G A T G C A C G T
C T G A A C T G C A T G A C G T A T G C C T G A A G C T T A C G T C A G C T G A T A C G T C G A A C T G A C T G C A G T A T G C C G T A

SPIB/MA0081.1/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TCAGGAACAGGGC
AGAGGAA------
 A C G T A G T C C G T A A C T G A C T G C G T A G T C A A G T C C G T A A C T G A C T G A C T G A T G C
C G T A T A C G T G C A C T A G C A T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TCAGGAACAGGGC
NDCAGGAARTNN--
 A C G T A C G T A G T C C G T A A C T G A C T G C G T A G T C A A G T C C G T A A C T G A C T G A C T G A T G C
T G C A C T G A T A G C G T C A A C T G A C T G C G T A G C T A T C A G G A C T T C A G T A C G A C G T A C G T

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TCAGGAACAGGGC-------
YCAGGCWCAGTACCAGGCTC
 A C G T A G T C C G T A A C T G A C T G C G T A G T C A A G T C C G T A A C T G A C T G A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G T C T G A C G C T A C T A G C T A G G A T C G C A T A T G C C G T A C T A G C A G T T C G A A T G C A G T C C G T A C A T G C T A G G T A C G A C T A T G C