Information for 9-CTAGTAAAAGCTT (Motif 15)

A G T C A C G T C G T A A C T G C G A T C G T A C G T A C G T A C G T A A T C G A G T C C G A T A C G T
Reverse Opposite:
C G T A C G T A A C T G A T G C A C G T A C G T A C G T A C G T C G T A A G T C A C G T C G T A A C T G
p-value:1e-8
log p-value:-2.043e+01
Information Content per bp:1.924
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.2 +/- 12.3bp
Average Position of motif in Background81.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CTAGTAAAAGCTT
GCTCGTAAAAA---
 A C G T A G T C A C G T C G T A A C T G C G A T C G T A C G T A C G T A C G T A A T C G A G T C C G A T A C G T
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A A C G T A C G T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CTAGTAAAAGCTT
AAACCTCGTAAAATTT-
 A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C T G C G A T C G T A C G T A C G T A C G T A A T C G A G T C C G A T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CTAGTAAAAGCTT
AAAGCTCGTAAAATTT-
 A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C T G C G A T C G T A C G T A C G T A C G T A A T C G A G T C C G A T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:4
Score:0.63
Offset:7
Orientation:reverse strand
Alignment:CTAGTAAAAGCTT-
-------AAGCTTG
 A G T C A C G T C G T A A C T G C G A T C G T A C G T A C G T A C G T A A T C G A G T C C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTAGTAAAAGCTT
CCYMATAAAA----
 A C G T A G T C A C G T C G T A A C T G C G A T C G T A C G T A C G T A C G T A A T C G A G T C C G A T A C G T
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CTAGTAAAAGCTT
NCYAATAAAA----
 A C G T A G T C A C G T C G T A A C T G C G A T C G T A C G T A C G T A C G T A A T C G A G T C C G A T A C G T
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T

MEF2B/MA0660.1/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CTAGTAAAAGCTT
GCTATAAATAGC--
 A C G T A G T C A C G T C G T A A C T G C G A T C G T A C G T A C G T A C G T A A T C G A G T C C G A T A C G T
C T A G G T A C A G C T C G T A G C A T C G T A G C T A C G T A A C G T G C T A T C A G G T A C A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTAGTAAAAGCTT
CCAATAAAAA---
 A G T C A C G T C G T A A C T G C G A T C G T A C G T A C G T A C G T A A T C G A G T C C G A T A C G T
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T

MEF2D/MA0773.1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTAGTAAAAGCTT
ACTATAAATAGA--
 A C G T A G T C A C G T C G T A A C T G C G A T C G T A C G T A C G T A C G T A A T C G A G T C C G A T A C G T
C T G A G A T C G A C T G T C A C G A T G C T A C G T A G C T A A C G T C T G A T C A G G T C A A C G T A C G T

PH0077.1_Hoxd12/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CTAGTAAAAGCTT
CAAGGTCGTAAAATCTT
 A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C T G C G A T C G T A C G T A C G T A C G T A A T C G A G T C C G A T A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T